Variant report

Variant	rs2238283
Chromosome Location	chr14:72419935-72419936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72410955..72413262-chr14:72418507..72421384,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10147777	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10483838	1.00[CEU][hapmap]
rs11846754	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850532	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12884777	0.84[JPT][hapmap]
rs17104975	0.84[JPT][hapmap]
rs17104979	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17105025	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs17105032	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17105061	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1860105	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1989628	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2190872	0.82[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2238274	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2238275	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2238276	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2238278	0.88[ASN][1000 genomes]
rs2238285	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239270	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2283422	0.84[JPT][hapmap]
rs23219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2332701	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35077074	0.82[ASN][1000 genomes]
rs35479711	0.83[ASN][1000 genomes]
rs36327	0.93[ASN][1000 genomes]
rs4902960	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902961	0.84[JPT][hapmap]
rs4902965	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs56731686	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59307289	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143919	0.84[JPT][hapmap]
rs7156200	0.84[JPT][hapmap]
rs720391	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs764624	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72410600-72425400	Weak transcription	Left Ventricle	heart
2	chr14:72417800-72425200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72418400-72424200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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