Variant report

Variant	rs2240474
Chromosome Location	chr7:105437643-105437644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105436100..105438476-chr7:105440003..105442392,2	K562	blood:
2	chr7:105429881..105433369-chr7:105434267..105438778,5	K562	blood:
3	chr7:105436538..105438990-chr7:105448430..105450104,2	K562	blood:
4	chr7:105434847..105438476-chr7:105439556..105442590,4	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11980210	0.88[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4727626	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs668647	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
3	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:105417200-105441800	Weak transcription	HepG2	liver
6	chr7:105417400-105439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:105418200-105440600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:105418400-105439200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:105420800-105439600	Weak transcription	Psoas Muscle	Psoas
11	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
12	chr7:105423200-105440400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:105426400-105440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:105428200-105440200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:105429000-105438600	Weak transcription	Left Ventricle	heart
16	chr7:105429000-105440600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:105429200-105437800	Weak transcription	Fetal Intestine Large	intestine
18	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
19	chr7:105429600-105439400	Weak transcription	Primary T cells from cord blood	blood
20	chr7:105429600-105440200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
23	chr7:105430400-105438200	Weak transcription	Gastric	stomach
24	chr7:105432000-105440200	Weak transcription	Fetal Thymus	thymus
25	chr7:105432600-105440200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:105433000-105437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:105433000-105438200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:105433000-105438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:105433000-105439000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:105433000-105444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:105433200-105438400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:105433200-105438400	Weak transcription	Fetal Intestine Small	intestine
33	chr7:105433200-105439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:105433800-105440400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:105434200-105440200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
37	chr7:105434600-105438800	Enhancers	Colon Smooth Muscle	Colon
38	chr7:105434600-105439000	Enhancers	Ovary	ovary
39	chr7:105434800-105438000	Enhancers	Fetal Muscle Leg	muscle
40	chr7:105435000-105439200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:105435200-105438000	Enhancers	Rectal Smooth Muscle	rectum
42	chr7:105435600-105437800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:105435600-105438200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:105435600-105438200	Weak transcription	Lung	lung
45	chr7:105435600-105438200	Enhancers	NHLF	lung
46	chr7:105435800-105438200	Weak transcription	HUVEC	blood vessel
47	chr7:105435800-105445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:105436000-105437800	Enhancers	NHDF-Ad	bronchial

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