Variant report

Variant	rs2244108
Chromosome Location	chr1:225063044-225063045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 224 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10399821	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10399941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10399959	1.00[EUR][1000 genomes]
rs10495231	0.85[ASN][1000 genomes]
rs1078794	1.00[EUR][1000 genomes]
rs10799282	1.00[ASN][1000 genomes]
rs10799283	1.00[ASN][1000 genomes]
rs10915724	1.00[EUR][1000 genomes]
rs10915732	1.00[EUR][1000 genomes]
rs10915733	0.96[ASN][1000 genomes]
rs10915743	1.00[ASN][1000 genomes]
rs10915744	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10915745	1.00[ASN][1000 genomes]
rs10915747	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs10915748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915758	0.92[ASN][1000 genomes]
rs10915761	0.85[ASN][1000 genomes]
rs10915762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915763	0.85[ASN][1000 genomes]
rs11487461	1.00[ASN][1000 genomes]
rs12060676	1.00[ASN][1000 genomes]
rs12061172	0.85[ASN][1000 genomes]
rs12061874	0.86[ASN][1000 genomes]
rs12068731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12068939	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12069537	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12071453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12072713	0.92[ASN][1000 genomes]
rs12073050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12074130	0.92[ASN][1000 genomes]
rs12075769	1.00[EUR][1000 genomes]
rs12077191	0.96[ASN][1000 genomes]
rs12079808	1.00[EUR][1000 genomes]
rs12082397	0.92[ASN][1000 genomes]
rs12086122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12086373	0.92[ASN][1000 genomes]
rs12086802	1.00[EUR][1000 genomes]
rs12088836	0.85[ASN][1000 genomes]
rs12090519	1.00[ASN][1000 genomes]
rs12090624	0.86[AFR][1000 genomes]
rs12093086	0.92[ASN][1000 genomes]
rs12093545	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs12095812	0.92[ASN][1000 genomes]
rs12095841	1.00[ASN][1000 genomes]
rs12097532	0.92[ASN][1000 genomes]
rs12097577	0.92[ASN][1000 genomes]
rs12097593	1.00[EUR][1000 genomes]
rs12239937	1.00[EUR][1000 genomes]
rs13376360	1.00[EUR][1000 genomes]
rs1395115	1.00[EUR][1000 genomes]
rs1482278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1580956	1.00[EUR][1000 genomes]
rs16854034	1.00[EUR][1000 genomes]
rs16854471	1.00[EUR][1000 genomes]
rs16855953	1.00[EUR][1000 genomes]
rs16856828	1.00[EUR][1000 genomes]
rs16858094	1.00[ASN][1000 genomes]
rs16858965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2060556	1.00[EUR][1000 genomes]
rs2244109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244113	0.80[AFR][1000 genomes]
rs2244198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245097	1.00[EUR][1000 genomes]
rs2254430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406099	1.00[ASN][1000 genomes]
rs2449262	1.00[EUR][1000 genomes]
rs2449264	1.00[EUR][1000 genomes]
rs2449265	1.00[EUR][1000 genomes]
rs2449267	1.00[EUR][1000 genomes]
rs2449268	1.00[EUR][1000 genomes]
rs2449270	1.00[EUR][1000 genomes]
rs2449271	1.00[EUR][1000 genomes]
rs2449272	1.00[EUR][1000 genomes]
rs2449275	1.00[EUR][1000 genomes]
rs2449277	1.00[EUR][1000 genomes]
rs2449278	1.00[EUR][1000 genomes]
rs2449279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2449283	1.00[EUR][1000 genomes]
rs2449284	1.00[EUR][1000 genomes]
rs2449286	1.00[EUR][1000 genomes]
rs2449288	1.00[EUR][1000 genomes]
rs2449289	1.00[EUR][1000 genomes]
rs2449290	1.00[EUR][1000 genomes]
rs2449294	1.00[EUR][1000 genomes]
rs2449305	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2449306	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2449309	1.00[EUR][1000 genomes]
rs2449312	1.00[EUR][1000 genomes]
rs2449314	1.00[EUR][1000 genomes]
rs2449317	1.00[EUR][1000 genomes]
rs2449319	1.00[EUR][1000 genomes]
rs2449321	1.00[EUR][1000 genomes]
rs2449323	1.00[EUR][1000 genomes]
rs2449324	1.00[EUR][1000 genomes]
rs2456338	1.00[EUR][1000 genomes]
rs2456343	1.00[EUR][1000 genomes]
rs2456344	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2456346	1.00[EUR][1000 genomes]
rs2456350	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2456352	1.00[EUR][1000 genomes]
rs2456354	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489299	1.00[EUR][1000 genomes]
rs2489305	1.00[EUR][1000 genomes]
rs2489307	1.00[EUR][1000 genomes]
rs2489309	1.00[EUR][1000 genomes]
rs2489315	1.00[EUR][1000 genomes]
rs2489316	1.00[EUR][1000 genomes]
rs2489317	1.00[EUR][1000 genomes]
rs2489318	1.00[EUR][1000 genomes]
rs2489319	1.00[EUR][1000 genomes]
rs2489321	1.00[EUR][1000 genomes]
rs2489323	1.00[EUR][1000 genomes]
rs2489326	1.00[EUR][1000 genomes]
rs2489329	1.00[EUR][1000 genomes]
rs2489331	1.00[EUR][1000 genomes]
rs2489333	1.00[EUR][1000 genomes]
rs2489334	1.00[EUR][1000 genomes]
rs2489335	1.00[EUR][1000 genomes]
rs2489336	1.00[EUR][1000 genomes]
rs2489339	1.00[EUR][1000 genomes]
rs2489340	1.00[EUR][1000 genomes]
rs2489342	1.00[EUR][1000 genomes]
rs2489345	1.00[EUR][1000 genomes]
rs2489347	1.00[EUR][1000 genomes]
rs2489349	1.00[EUR][1000 genomes]
rs2489350	1.00[EUR][1000 genomes]
rs2489351	1.00[EUR][1000 genomes]
rs2489354	1.00[EUR][1000 genomes]
rs2489356	1.00[EUR][1000 genomes]
rs2489357	1.00[EUR][1000 genomes]
rs2489358	1.00[EUR][1000 genomes]
rs2489359	1.00[EUR][1000 genomes]
rs2489360	1.00[EUR][1000 genomes]
rs2501065	1.00[EUR][1000 genomes]
rs2501074	1.00[EUR][1000 genomes]
rs2501076	1.00[EUR][1000 genomes]
rs2501077	1.00[EUR][1000 genomes]
rs2501079	1.00[EUR][1000 genomes]
rs2501088	1.00[EUR][1000 genomes]
rs2501103	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2501104	1.00[EUR][1000 genomes]
rs2501112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2501113	1.00[EUR][1000 genomes]
rs2501117	1.00[EUR][1000 genomes]
rs2501121	1.00[EUR][1000 genomes]
rs2501124	1.00[EUR][1000 genomes]
rs2501128	1.00[EUR][1000 genomes]
rs2501136	1.00[EUR][1000 genomes]
rs2501137	1.00[EUR][1000 genomes]
rs2501142	1.00[EUR][1000 genomes]
rs2501144	1.00[EUR][1000 genomes]
rs2501148	1.00[EUR][1000 genomes]
rs2501150	1.00[EUR][1000 genomes]
rs2501152	1.00[EUR][1000 genomes]
rs2501157	1.00[EUR][1000 genomes]
rs2516334	1.00[EUR][1000 genomes]
rs2662910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662912	0.85[AFR][1000 genomes]
rs2662913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662915	0.86[AFR][1000 genomes]
rs2802546	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2802567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802734	0.88[AFR][1000 genomes]
rs2802736	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802737	0.86[AFR][1000 genomes]
rs28510743	1.00[ASN][1000 genomes]
rs28673436	1.00[ASN][1000 genomes]
rs2929627	1.00[EUR][1000 genomes]
rs2929629	1.00[EUR][1000 genomes]
rs2929632	1.00[EUR][1000 genomes]
rs3102105	1.00[EUR][1000 genomes]
rs4121159	1.00[EUR][1000 genomes]
rs4256778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55708629	0.85[ASN][1000 genomes]
rs56302122	0.85[ASN][1000 genomes]
rs57535083	1.00[EUR][1000 genomes]
rs58205526	1.00[EUR][1000 genomes]
rs58651151	1.00[EUR][1000 genomes]
rs58823550	1.00[EUR][1000 genomes]
rs59318794	1.00[ASN][1000 genomes]
rs59730608	1.00[EUR][1000 genomes]
rs59839860	1.00[EUR][1000 genomes]
rs60428528	1.00[EUR][1000 genomes]
rs60619295	1.00[ASN][1000 genomes]
rs61329501	1.00[EUR][1000 genomes]
rs6426164	1.00[EUR][1000 genomes]
rs6662177	0.85[ASN][1000 genomes]
rs6666664	1.00[EUR][1000 genomes]
rs6670335	1.00[EUR][1000 genomes]
rs6680233	0.85[ASN][1000 genomes]
rs6680659	1.00[EUR][1000 genomes]
rs6683197	1.00[EUR][1000 genomes]
rs6689287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6693680	1.00[EUR][1000 genomes]
rs6694400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698293	1.00[EUR][1000 genomes]
rs6700281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73129804	1.00[EUR][1000 genomes]
rs74146611	0.85[ASN][1000 genomes]
rs74149417	1.00[ASN][1000 genomes]
rs74149420	1.00[ASN][1000 genomes]
rs74149426	0.92[ASN][1000 genomes]
rs74149428	0.92[ASN][1000 genomes]
rs74149429	0.89[ASN][1000 genomes]
rs74149436	0.85[ASN][1000 genomes]
rs7515136	1.00[EUR][1000 genomes]
rs7523371	1.00[EUR][1000 genomes]
rs7525497	1.00[EUR][1000 genomes]
rs7526764	1.00[EUR][1000 genomes]
rs7527885	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7537947	1.00[EUR][1000 genomes]
rs7550589	1.00[EUR][1000 genomes]
rs9426101	1.00[EUR][1000 genomes]
rs9426103	1.00[EUR][1000 genomes]
rs9426104	1.00[EUR][1000 genomes]
rs9426147	1.00[EUR][1000 genomes]
rs9426156	1.00[EUR][1000 genomes]
rs9426159	1.00[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225056400-225063200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:225060200-225063800	Enhancers	Fetal Lung	lung
3	chr1:225060200-225064200	Enhancers	Fetal Intestine Small	intestine
4	chr1:225060800-225063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:225060800-225063200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:225060800-225063400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:225060800-225063400	Enhancers	Fetal Stomach	stomach
8	chr1:225060800-225064000	Enhancers	Fetal Intestine Large	intestine
9	chr1:225061000-225063200	Enhancers	HSMMtube	muscle
10	chr1:225061000-225063400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr1:225061200-225067200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:225061200-225068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:225061600-225063200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:225061600-225063400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:225061800-225063200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:225061800-225067000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:225062200-225063200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:225062200-225066400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:225062600-225063800	Enhancers	Pancreas	Pancrea
20	chr1:225062600-225064000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:225062800-225063400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:225062800-225063800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:225062800-225064000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr1:225062800-225066800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:225063000-225063400	Weak transcription	Liver	Liver
26	chr1:225063000-225063600	Bivalent Enhancer	HepG2	liver
27	chr1:225063000-225063800	Enhancers	Fetal Kidney	kidney
28	chr1:225063000-225064000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:225063000-225064200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr1:225063000-225066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:225063000-225071600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links