Variant report

Variant	rs2244113
Chromosome Location	chr1:225062793-225062794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10399821	0.86[CHB][hapmap]
rs10399941	0.86[CHB][hapmap]
rs10915744	0.82[CHB][hapmap]
rs10915748	0.86[CHB][hapmap]
rs10915749	0.86[CHB][hapmap]
rs10915750	0.86[CHB][hapmap]
rs10915751	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs10915757	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs10915762	0.82[CHB][hapmap]
rs12068731	0.85[CHB][hapmap]
rs12071453	0.86[CHB][hapmap]
rs12073050	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs12086122	0.86[CHB][hapmap]
rs12090624	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12093545	0.83[CHD][hapmap]
rs1482278	0.82[CHB][hapmap]
rs1506071	0.83[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs16858965	0.82[CHB][hapmap]
rs1892122	0.98[ASN][1000 genomes]
rs2244108	0.80[AFR][1000 genomes]
rs2244109	0.80[AFR][1000 genomes]
rs2244198	0.80[AFR][1000 genomes]
rs2254430	0.86[AFR][1000 genomes]
rs2489327	0.83[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs2489348	0.83[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs2489352	0.83[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs2662910	0.80[AFR][1000 genomes]
rs2662911	0.86[AFR][1000 genomes]
rs2662912	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2662913	0.86[AFR][1000 genomes]
rs2662915	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2802546	0.85[AFR][1000 genomes]
rs2802547	0.80[AFR][1000 genomes]
rs2802567	0.80[AFR][1000 genomes]
rs2802734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802736	0.86[AFR][1000 genomes]
rs2802737	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4256778	0.80[AFR][1000 genomes]
rs6689287	0.86[CHB][hapmap]
rs6694400	0.86[AFR][1000 genomes]
rs6700281	0.86[CHB][hapmap]
rs7527885	0.86[CHB][hapmap]
rs981067	0.83[MKK][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225056400-225063200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:225060200-225063800	Enhancers	Fetal Lung	lung
3	chr1:225060200-225064200	Enhancers	Fetal Intestine Small	intestine
4	chr1:225060800-225063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:225060800-225063200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:225060800-225063400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:225060800-225063400	Enhancers	Fetal Stomach	stomach
8	chr1:225060800-225064000	Enhancers	Fetal Intestine Large	intestine
9	chr1:225061000-225062800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:225061000-225062800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:225061000-225062800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:225061000-225063000	Enhancers	HepG2	liver
13	chr1:225061000-225063200	Enhancers	HSMMtube	muscle
14	chr1:225061000-225063400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:225061200-225062800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:225061200-225063000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:225061200-225063000	Enhancers	Colon Smooth Muscle	Colon
18	chr1:225061200-225067200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:225061200-225068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:225061400-225062800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:225061400-225063000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:225061400-225063000	Enhancers	Liver	Liver
23	chr1:225061600-225063200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:225061600-225063400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:225061800-225063000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:225061800-225063000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:225061800-225063200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:225061800-225067000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr1:225062000-225062800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:225062200-225063000	Enhancers	Primary hematopoietic stem cells	blood
31	chr1:225062200-225063200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:225062200-225066400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:225062400-225062800	Enhancers	Colonic Mucosa	Colon
34	chr1:225062600-225063000	Enhancers	Fetal Brain Male	brain
35	chr1:225062600-225063000	Flanking Active TSS	Fetal Kidney	kidney
36	chr1:225062600-225063000	Enhancers	Ovary	ovary
37	chr1:225062600-225063800	Enhancers	Pancreas	Pancrea
38	chr1:225062600-225064000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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