Variant report

Variant	rs2244375
Chromosome Location	chr10:119031378-119031379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDZD8-6	chr10:119031051-119031834	expReg_chr10_8334_-

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10082478	0.82[ASN][1000 genomes]
rs1008448	0.91[ASN][1000 genomes]
rs10377	0.88[ASN][1000 genomes]
rs10787767	0.82[ASN][1000 genomes]
rs10787770	0.83[ASN][1000 genomes]
rs10886054	0.85[ASN][1000 genomes]
rs10886058	0.82[ASN][1000 genomes]
rs10886061	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10886063	0.83[ASN][1000 genomes]
rs10886064	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10886065	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197960	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197968	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197969	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197970	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11197974	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197975	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197976	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197977	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11197981	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11498892	0.84[ASN][1000 genomes]
rs12243133	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12243628	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12247698	0.83[ASN][1000 genomes]
rs12256994	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12263512	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12265713	0.82[ASN][1000 genomes]
rs12269460	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12413507	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12573009	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs14240	0.88[ASN][1000 genomes]
rs1468563	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935166	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935167	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935168	0.83[ASN][1000 genomes]
rs1954212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052075	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2096112	0.91[ASN][1000 genomes]
rs2244249	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255062	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2255321	0.85[ASN][1000 genomes]
rs2255367	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2275670	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2420457	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2429505	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2429508	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2487692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490628	0.85[ASN][1000 genomes]
rs2490631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532781	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532782	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532783	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532785	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532786	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532787	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532788	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532789	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532792	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532793	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532795	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532796	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532809	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532813	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532835	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532836	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532838	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532839	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532841	0.91[ASN][1000 genomes]
rs2532842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532844	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794414	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794416	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2794418	0.91[ASN][1000 genomes]
rs2794419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794421	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2794435	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2794436	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803799	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803801	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803802	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803803	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2803804	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2803807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803809	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2803810	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2803816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34247425	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3523	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363227	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363228	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363229	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363230	0.88[ASN][1000 genomes]
rs363235	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363236	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363237	0.88[ASN][1000 genomes]
rs363238	0.85[ASN][1000 genomes]
rs363240	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363242	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363243	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363271	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363272	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363276	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363282	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363303	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3814229	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3814230	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4751623	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752048	0.82[ASN][1000 genomes]
rs4752054	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6585431	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7070594	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7072027	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7072785	0.86[ASN][1000 genomes]
rs7086651	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7087395	0.83[ASN][1000 genomes]
rs7088401	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825515	0.83[ASN][1000 genomes]
rs72825530	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7897828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898092	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7901203	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs979992	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2244375	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119017400-119034000	Weak transcription	Gastric	stomach
2	chr10:119020000-119034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119020000-119042600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119020600-119035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:119020600-119043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart
7	chr10:119021400-119043200	Weak transcription	Fetal Intestine Small	intestine
8	chr10:119022600-119042000	Weak transcription	Fetal Intestine Large	intestine
9	chr10:119023000-119031800	Weak transcription	Ovary	ovary
10	chr10:119023800-119043200	Weak transcription	Spleen	Spleen
11	chr10:119026000-119032600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:119026200-119031400	Weak transcription	K562	blood
13	chr10:119027000-119038400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:119027800-119042600	Weak transcription	HepG2	liver
15	chr10:119028800-119042600	Weak transcription	Fetal Kidney	kidney
16	chr10:119029200-119031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:119029200-119042800	Weak transcription	Primary T cells from cord blood	blood
18	chr10:119029200-119043000	Weak transcription	Fetal Thymus	thymus
19	chr10:119029200-119043200	Weak transcription	Fetal Stomach	stomach
20	chr10:119030000-119040800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:119030600-119031400	Enhancers	NH-A	brain
22	chr10:119030600-119031600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:119030600-119031600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:119030600-119031600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:119030600-119031600	Enhancers	A549	lung
26	chr10:119030600-119031800	Enhancers	NHEK	skin
27	chr10:119030600-119032000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:119030600-119032000	Enhancers	HMEC	breast
29	chr10:119030600-119032600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:119030800-119031400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:119030800-119031600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:119030800-119031800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:119031200-119031400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:119031200-119032600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:119031200-119033400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr10:119031200-119042600	Weak transcription	Thymus	Thymus

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