Variant report

Variant	rs2245821
Chromosome Location	chr6:102002397-102002398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1475917	0.91[ASN][1000 genomes]
rs2518311	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2749071	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749073	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749075	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749081	0.91[ASN][1000 genomes]
rs2852571	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852577	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102000200-102003000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:102001800-102002400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:102001800-102002600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:102001800-102002800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:102001800-102003200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:102002000-102003000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:102002000-102003400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:102002000-102004600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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