Variant report

Variant	rs2247362
Chromosome Location	chr4:175446356-175446357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17060612	1.00[EUR][1000 genomes]
rs2251807	1.00[EUR][1000 genomes]
rs2253170	1.00[EUR][1000 genomes]
rs2253270	1.00[EUR][1000 genomes]
rs2254225	1.00[EUR][1000 genomes]
rs2254350	1.00[EUR][1000 genomes]
rs2255737	1.00[EUR][1000 genomes]
rs2555630	1.00[EUR][1000 genomes]
rs2555631	1.00[EUR][1000 genomes]
rs2555661	1.00[EUR][1000 genomes]
rs2555668	1.00[EUR][1000 genomes]
rs2612657	1.00[EUR][1000 genomes]
rs2612660	1.00[EUR][1000 genomes]
rs2612661	1.00[EUR][1000 genomes]
rs2612678	1.00[EUR][1000 genomes]
rs2612688	1.00[EUR][1000 genomes]
rs45509091	1.00[EUR][1000 genomes]
rs45525332	1.00[EUR][1000 genomes]
rs45527531	1.00[EUR][1000 genomes]
rs45557833	1.00[EUR][1000 genomes]
rs45604244	1.00[EUR][1000 genomes]
rs56812046	1.00[EUR][1000 genomes]
rs6825010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997311	1.00[EUR][1000 genomes]
rs73867619	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880884	chr4:175439056-175453830	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175444200-175446800	Weak transcription	Small Intestine	intestine
2	chr4:175444600-175446400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:175444800-175449200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:175445000-175446400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:175445000-175448000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:175445000-175452800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:175445000-175453600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:175445000-175457600	Weak transcription	Placenta	Placenta
9	chr4:175445400-175446400	Weak transcription	Stomach Mucosa	stomach
10	chr4:175445600-175446400	Enhancers	A549	lung
11	chr4:175445800-175448200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:175445800-175449000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:175445800-175449000	Weak transcription	K562	blood
14	chr4:175446000-175446400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:175446200-175446400	Active TSS	Duodenum Mucosa	Duodenum
16	chr4:175446200-175446600	Weak transcription	Fetal Intestine Large	intestine
17	chr4:175446200-175449000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:175446200-175452200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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