Variant report

Variant	rs2247559
Chromosome Location	chr18:24827956-24827957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11660925	0.83[ASN][1000 genomes]
rs11661183	0.83[ASN][1000 genomes]
rs11661240	0.83[ASN][1000 genomes]
rs11663416	0.85[ASN][1000 genomes]
rs11664424	0.85[ASN][1000 genomes]
rs11874060	0.83[ASN][1000 genomes]
rs1426870	0.83[ASN][1000 genomes]
rs1593604	0.85[ASN][1000 genomes]
rs16943397	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs61499406	0.83[ASN][1000 genomes]
rs7231906	0.81[ASN][1000 genomes]
rs7242600	0.85[ASN][1000 genomes]
rs72639455	0.83[ASN][1000 genomes]
rs73408433	0.84[AFR][1000 genomes]
rs7342997	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs8087045	0.83[ASN][1000 genomes]
rs8087183	0.83[ASN][1000 genomes]
rs8094742	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2247559	CHST9	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24825800-24829400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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