Variant report

Variant	rs2252606
Chromosome Location	chr15:52232862-52232863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52232725..52234796-chr15:52242027..52243795,2	MCF-7	breast:
2	chr15:52215096..52217420-chr15:52231875..52234345,2	MCF-7	breast:
3	chr15:52230761..52232495-chr15:52232835..52234665,3	MCF-7	breast:
4	chr15:52223859..52226677-chr15:52229805..52233485,3	K562	blood:
5	chr15:52232743..52235085-chr15:52238669..52241010,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 309 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:306)

rs_ID	r²[population]
rs1025184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1035739	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10444798	0.82[ASN][1000 genomes]
rs10444823	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10444824	0.84[EUR][1000 genomes]
rs10444825	0.83[EUR][1000 genomes]
rs10775145	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs10851503	0.93[EUR][1000 genomes]
rs10851504	0.89[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11070869	0.84[EUR][1000 genomes]
rs1135871	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11630084	0.95[CHB][hapmap]
rs11630253	0.97[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11631858	0.83[EUR][1000 genomes]
rs11636345	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs11636869	0.87[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11638161	0.84[ASN][1000 genomes]
rs11638677	0.96[EUR][1000 genomes]
rs11638820	0.95[CHB][hapmap]
rs12050524	0.83[EUR][1000 genomes]
rs12438686	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs12591672	0.96[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12901638	0.89[EUR][1000 genomes]
rs12902346	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12903707	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12904413	0.84[EUR][1000 genomes]
rs12904900	0.84[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12912928	0.87[EUR][1000 genomes]
rs12913583	0.86[EUR][1000 genomes]
rs12913850	0.93[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12917133	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1545602	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17539905	0.97[EUR][1000 genomes]
rs17610862	0.84[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17612102	0.92[EUR][1000 genomes]
rs17612123	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17705732	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs1811326	1.00[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1840708	1.00[CEU][hapmap]
rs1863430	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1867984	1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1895863	0.92[ASN][1000 genomes]
rs1972689	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1991267	0.85[CEU][hapmap]
rs2006772	0.81[AMR][1000 genomes]
rs2006773	0.82[CHB][hapmap];0.93[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2009972	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2010026	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2014638	0.81[CHB][hapmap]
rs2034856	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2034857	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2034858	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2114191	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2241503	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251135	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2264339	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2414119	0.88[ASN][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.96[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2433220	0.80[EUR][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2433222	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2436657	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2436658	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2436661	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2436662	0.93[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2448947	0.96[EUR][1000 genomes]
rs2448948	0.97[EUR][1000 genomes]
rs2448949	0.93[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2448951	0.97[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2470590	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470591	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2470600	0.97[EUR][1000 genomes]
rs2470601	0.96[EUR][1000 genomes]
rs2470602	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470603	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470604	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470605	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470607	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470608	0.97[EUR][1000 genomes]
rs2470610	0.96[EUR][1000 genomes]
rs2470611	0.97[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2470616	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs2470618	0.94[EUR][1000 genomes]
rs2470619	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2554305	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554306	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554307	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554308	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2554315	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs2554322	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs2554328	0.93[EUR][1000 genomes]
rs2554332	0.81[CHB][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs2554334	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554336	1.00[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554337	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554342	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554345	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2554348	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2554349	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554350	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554353	0.93[EUR][1000 genomes]
rs2570224	0.81[AMR][1000 genomes]
rs2570228	1.00[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570231	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2570233	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2570237	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2570238	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2570240	0.90[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2570248	0.93[EUR][1000 genomes]
rs2570251	0.81[AMR][1000 genomes]
rs2570252	0.82[CHB][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs2570253	0.82[CHB][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs2570258	1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570260	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2570263	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2570268	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570269	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570271	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570275	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593167	0.81[ASN][1000 genomes]
rs2593168	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593177	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2593179	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593181	0.82[CEU][hapmap]
rs2593182	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2593183	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593185	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2593191	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593194	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593198	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593204	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623243	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623244	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623254	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2623259	0.81[CHB][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes]
rs2623262	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2623266	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs2623279	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623284	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623286	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623288	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2623289	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2912188	0.96[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2912190	0.83[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2916170	0.92[EUR][1000 genomes]
rs2916171	0.93[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2916175	0.94[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2921951	0.95[EUR][1000 genomes]
rs2921953	0.95[EUR][1000 genomes]
rs2921957	0.86[EUR][1000 genomes]
rs2929422	0.96[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2929428	0.97[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2959289	0.94[EUR][1000 genomes]
rs2959291	0.96[EUR][1000 genomes]
rs2959292	0.96[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs2959298	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2959300	0.95[EUR][1000 genomes]
rs2959302	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959304	0.89[EUR][1000 genomes]
rs2959305	0.94[EUR][1000 genomes]
rs2959306	0.96[EUR][1000 genomes]
rs2959307	0.95[EUR][1000 genomes]
rs3110551	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3110553	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34504520	0.84[EUR][1000 genomes]
rs34842090	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35270232	0.86[EUR][1000 genomes]
rs35823585	0.86[EUR][1000 genomes]
rs36087956	0.96[EUR][1000 genomes]
rs3751596	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs3794532	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs3794534	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs3794535	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs3794536	0.88[ASN][1000 genomes]
rs4238383	0.95[CHB][hapmap]
rs4365237	0.80[EUR][1000 genomes]
rs4774602	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4775978	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4775982	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4775983	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs55843525	0.81[ASN][1000 genomes]
rs56148956	0.84[EUR][1000 genomes]
rs56185947	0.84[EUR][1000 genomes]
rs58758283	0.88[ASN][1000 genomes]
rs60329909	0.87[ASN][1000 genomes]
rs62015190	0.92[EUR][1000 genomes]
rs62016192	0.96[EUR][1000 genomes]
rs6493519	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6493522	0.87[ASN][1000 genomes]
rs6493523	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6493525	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs689884	0.95[CHB][hapmap]
rs689922	0.81[ASN][1000 genomes]
rs690287	0.82[ASN][1000 genomes]
rs690638	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs7162554	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7164961	0.84[EUR][1000 genomes]
rs7165283	0.95[CHB][hapmap]
rs7170091	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7170910	0.89[EUR][1000 genomes]
rs7171459	0.88[ASN][1000 genomes]
rs7171516	0.84[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7176421	0.93[ASN][1000 genomes]
rs7178166	0.80[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7178940	0.85[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap]
rs7181553	0.95[CHB][hapmap]
rs726158	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs72732914	0.94[EUR][1000 genomes]
rs72732952	0.93[ASN][1000 genomes]
rs8024081	0.83[ASN][1000 genomes]
rs8024088	0.83[ASN][1000 genomes]
rs8024585	0.87[EUR][1000 genomes]
rs8024589	0.82[ASN][1000 genomes]
rs8025069	0.80[EUR][1000 genomes]
rs8026521	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8027721	0.80[EUR][1000 genomes]
rs8028486	0.86[EUR][1000 genomes]
rs8028890	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs8029036	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033433	0.88[EUR][1000 genomes]
rs8035126	0.89[EUR][1000 genomes]
rs8038344	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs8040975	0.80[EUR][1000 genomes]
rs8040991	0.93[EUR][1000 genomes]
rs8041268	0.88[ASN][1000 genomes]
rs919059	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9635308	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs990665	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2252606	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52179600-52259800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:52193600-52233600	Weak transcription	Fetal Brain Male	brain
3	chr15:52194400-52236800	Weak transcription	Fetal Kidney	kidney
4	chr15:52194400-52239000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:52196200-52234000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:52197000-52234200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:52197000-52234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:52200400-52262200	Weak transcription	Stomach Mucosa	stomach
9	chr15:52201000-52238800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:52204800-52238800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:52210000-52233600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:52210000-52239000	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:52211600-52237600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:52211600-52239200	Weak transcription	Right Ventricle	heart
15	chr15:52212400-52241600	Weak transcription	Small Intestine	intestine
16	chr15:52215200-52234000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:52216000-52238600	Weak transcription	Pancreas	Pancrea
18	chr15:52216400-52234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:52217200-52238400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:52217200-52238800	Weak transcription	Brain Angular Gyrus	brain
21	chr15:52217600-52234200	Weak transcription	NHLF	lung
22	chr15:52217600-52238800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:52217800-52237400	Weak transcription	Aorta	Aorta
24	chr15:52217800-52237400	Weak transcription	Brain Anterior Caudate	brain
25	chr15:52217800-52239000	Weak transcription	Gastric	stomach
26	chr15:52218000-52243200	Weak transcription	Fetal Heart	heart
27	chr15:52218200-52234200	Weak transcription	Esophagus	oesophagus
28	chr15:52221600-52233600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr15:52222600-52259800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:52222800-52236200	Strong transcription	Fetal Stomach	stomach
31	chr15:52223000-52233400	Weak transcription	HSMM	muscle
32	chr15:52223200-52245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:52223400-52234200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:52224000-52237400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:52224200-52233400	Weak transcription	NHDF-Ad	bronchial
36	chr15:52224200-52237200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:52226000-52255200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:52226200-52234600	Strong transcription	Fetal Thymus	thymus
39	chr15:52226200-52242600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:52226200-52254800	Strong transcription	Thymus	Thymus
41	chr15:52226200-52255000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr15:52226200-52259400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:52226400-52233200	Weak transcription	Left Ventricle	heart
44	chr15:52226600-52233400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:52226800-52237200	Weak transcription	Spleen	Spleen
46	chr15:52227000-52235600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:52227400-52233400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:52227400-52234800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr15:52227400-52255000	Strong transcription	Liver	Liver
50	chr15:52227400-52258400	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

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