Variant report

Variant	rs225301
Chromosome Location	chr17:33922411-33922412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33921434..33923649-chr17:33954336..33955867,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs225285	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33915000-33923600	Weak transcription	Gastric	stomach
2	chr17:33915200-33923400	Weak transcription	Colonic Mucosa	Colon
3	chr17:33915200-33923600	Weak transcription	Esophagus	oesophagus
4	chr17:33915200-33923600	Weak transcription	Pancreas	Pancrea
5	chr17:33915200-33930600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:33915200-33932600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:33915400-33923600	Weak transcription	Aorta	Aorta
8	chr17:33915600-33923600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:33915600-33954600	Weak transcription	Small Intestine	intestine
10	chr17:33915800-33923600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr17:33915800-33923600	Weak transcription	Right Ventricle	heart
12	chr17:33916000-33923800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:33916000-33942000	Weak transcription	Right Atrium	heart
14	chr17:33916400-33924200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr17:33916400-33944800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr17:33916600-33923800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr17:33916800-33923000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr17:33916800-33923800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr17:33916800-33924600	Weak transcription	Brain Substantia Nigra	brain
20	chr17:33916800-33925200	Weak transcription	Fetal Brain Male	brain
21	chr17:33916800-33925200	Weak transcription	Fetal Kidney	kidney
22	chr17:33916800-33945400	Weak transcription	Stomach Mucosa	stomach
23	chr17:33916800-34001200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr17:33917600-33923800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr17:33917600-33934600	Weak transcription	Brain Angular Gyrus	brain
26	chr17:33917800-33923000	Weak transcription	Fetal Brain Female	brain
27	chr17:33918000-33923200	Weak transcription	NHLF	lung
28	chr17:33919400-33940000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:33919600-33931000	Strong transcription	K562	blood
30	chr17:33920000-33937400	Strong transcription	A549	lung
31	chr17:33920400-33936400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr17:33920600-33926600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr17:33920600-33939800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr17:33920600-33939800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr17:33920600-33939800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:33920600-33940000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr17:33920600-33940200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr17:33920600-33942200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr17:33920600-33942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr17:33920600-33944000	Strong transcription	Dnd41	blood
41	chr17:33920600-33969800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:33920800-33922600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:33920800-33926200	Strong transcription	Primary B cells from cord blood	blood
44	chr17:33920800-33931000	Strong transcription	GM12878-XiMat	blood
45	chr17:33920800-33931000	Strong transcription	Osteobl	bone
46	chr17:33920800-33938400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr17:33920800-33975800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr17:33921000-33925800	Strong transcription	Hela-S3	cervix
49	chr17:33921000-33926600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr17:33921000-33926800	Strong transcription	HMEC	breast

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