Variant report

Variant	rs2253641
Chromosome Location	chr1:220771892-220771893
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779408	0.86[EUR][1000 genomes]
rs10779409	0.88[EUR][1000 genomes]
rs10779414	0.84[CEU][hapmap]
rs12048541	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs12753927	0.84[EUR][1000 genomes]
rs12758833	0.88[EUR][1000 genomes]
rs17007855	0.84[EUR][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs1933002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1933008	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2378401	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378402	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2589578	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2589588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786607	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2786609	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2786617	0.81[MEX][hapmap]
rs2786619	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2889928	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2993209	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2994527	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35327085	0.84[EUR][1000 genomes]
rs35553664	0.88[EUR][1000 genomes]
rs3737296	0.94[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3753873	0.82[CEU][hapmap]
rs3806329	0.85[CHD][hapmap]
rs4011894	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4846657	0.94[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6541155	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[ASN][1000 genomes]
rs6677302	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6699189	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6699196	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7514431	1.00[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7532064	0.83[EUR][1000 genomes]
rs9431262	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
3	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
4	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
5	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
7	chr1:220753400-220778400	Weak transcription	NHEK	skin
8	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:220764400-220779200	Weak transcription	Fetal Heart	heart
14	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:220767800-220784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:220768000-220775000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:220768000-220790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:220768200-220778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:220768200-220784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:220768200-220791600	Weak transcription	Brain Germinal Matrix	brain
25	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
26	chr1:220768800-220775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:220768800-220784400	Weak transcription	Fetal Brain Female	brain
28	chr1:220769600-220775000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:220769800-220772800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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