Variant report

Variant	rs2254307
Chromosome Location	chr7:147666838-147666839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1006506	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10243319	0.86[YRI][hapmap]
rs10808047	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12703987	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883780	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17170777	0.89[CHD][hapmap];0.87[ASN][1000 genomes]
rs17170785	0.85[JPT][hapmap]
rs17170800	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1922878	0.86[GIH][hapmap]
rs2246605	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2249958	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2250061	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2373276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2373277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2373284	0.88[YRI][hapmap]
rs2707579	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2707592	0.82[GIH][hapmap]
rs2707593	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs2708249	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708252	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2708277	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708282	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2710084	0.91[CEU][hapmap]
rs2710094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs28522281	0.85[ASN][1000 genomes]
rs2888540	0.88[YRI][hapmap]
rs2888541	0.84[YRI][hapmap]
rs4296960	0.88[YRI][hapmap]
rs4726902	0.95[GIH][hapmap]
rs66949315	0.85[ASN][1000 genomes]
rs6958434	0.95[GIH][hapmap]
rs73168548	0.85[ASN][1000 genomes]
rs7793325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs9640511	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691133	0.85[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links