Variant report

Variant	rs2257598
Chromosome Location	chr1:71271871-71271872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1108801	0.82[EUR][1000 genomes]
rs11209697	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12022025	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12033260	0.83[EUR][1000 genomes]
rs12046339	0.84[EUR][1000 genomes]
rs12409292	0.92[ASN][1000 genomes]
rs1327450	0.87[ASN][1000 genomes]
rs1409981	0.90[MEX][hapmap]
rs1889599	0.82[EUR][1000 genomes]
rs2257934	0.96[ASN][1000 genomes]
rs2258875	0.97[ASN][1000 genomes]
rs2421783	0.82[EUR][1000 genomes]
rs34289107	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34384777	0.84[EUR][1000 genomes]
rs4523478	0.96[ASN][1000 genomes]
rs998550	0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2257598	PTGER3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71271000-71272600	Weak transcription	Right Atrium	heart
2	chr1:71271600-71272600	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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