Variant report

Variant	rs2258909
Chromosome Location	chr20:23918454-23918455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23917673..23918874-chr20:23976593..23977514,3	K562	blood:
2	chr20:23917874..23918575-chr20:24189095..24189921,2	MCF-7	breast:
3	chr20:23918077..23918602-chr20:24144722..24145283,2	MCF-7	breast:
4	chr20:23918328..23919972-chr20:23977586..23980315,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1361631	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1797042	0.90[ASN][1000 genomes]
rs2145970	0.84[AFR][1000 genomes]
rs2145971	0.85[AFR][1000 genomes]
rs2208661	0.85[AFR][1000 genomes]
rs2224548	0.84[AFR][1000 genomes]
rs2224549	0.87[AFR][1000 genomes]
rs2260317	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260365	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260409	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2260451	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2260455	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2261399	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2983538	0.97[ASN][1000 genomes]
rs2995100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2995685	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3004159	0.97[ASN][1000 genomes]
rs3004160	0.97[ASN][1000 genomes]
rs4815251	0.87[AFR][1000 genomes]
rs4815252	0.85[AFR][1000 genomes]
rs4815259	0.84[AFR][1000 genomes]
rs4815260	0.84[AFR][1000 genomes]
rs6049256	0.85[AFR][1000 genomes]
rs6049259	0.85[AFR][1000 genomes]
rs6049260	0.85[AFR][1000 genomes]
rs6049268	0.86[AFR][1000 genomes]
rs6049272	0.84[AFR][1000 genomes]
rs6049275	0.89[AFR][1000 genomes]
rs6049276	0.89[AFR][1000 genomes]
rs6076168	0.85[AFR][1000 genomes]
rs6083338	0.82[AFR][1000 genomes]
rs6106762	0.89[AFR][1000 genomes]
rs6132685	0.89[AFR][1000 genomes]
rs755031	0.88[AFR][1000 genomes]
rs755033	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23917800-23918600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr20:23918200-23918600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr20:23918200-23918600	Enhancers	Dnd41	blood

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