Variant report

Variant	rs2263587
Chromosome Location	chr5:116722172-116722173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1030461	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1366185	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1366187	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2016802	0.82[AMR][1000 genomes]
rs2560583	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2560586	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2560593	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2560600	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2560608	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2624459	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2624462	0.80[AMR][1000 genomes]
rs2624463	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2624558	0.81[AMR][1000 genomes]
rs950073	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116721800-116722200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:116722000-116722200	ZNF genes & repeats	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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