Variant report

Variant	rs2268987
Chromosome Location	chr2:37533175-37533176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37517751..37520249-chr2:37531387..37534324,2	K562	blood:
2	chr2:37526501..37528416-chr2:37533023..37534788,2	K562	blood:
3	chr2:37531022..37533625-chr2:37544368..37546225,2	K562	blood:
4	chr2:37512105..37515797-chr2:37531603..37534989,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10177176	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10190959	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs1056021	0.82[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs11124574	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs11124578	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1158218	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1158219	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11682607	0.87[ASN][1000 genomes]
rs11685805	0.82[ASN][1000 genomes]
rs11689794	0.87[ASN][1000 genomes]
rs11893943	0.82[ASN][1000 genomes]
rs12616151	0.85[ASN][1000 genomes]
rs12618410	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs12712532	0.85[ASN][1000 genomes]
rs13015451	0.85[ASN][1000 genomes]
rs13030789	0.81[ASN][1000 genomes]
rs13420463	0.90[ASN][1000 genomes]
rs1477055	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17020386	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020490	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17409947	0.82[CEU][hapmap]
rs17481834	0.82[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap]
rs1989172	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2041836	0.81[ASN][1000 genomes]
rs2300881	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300884	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300885	0.83[TSI][hapmap]
rs2300892	0.83[TSI][hapmap]
rs2372993	0.81[ASN][1000 genomes]
rs3770757	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3770759	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3819892	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs4581878	0.90[ASN][1000 genomes]
rs4670194	0.92[ASN][1000 genomes]
rs4670195	0.91[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4670688	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670689	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs4998429	0.85[JPT][hapmap]
rs56774710	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57361399	0.99[ASN][1000 genomes]
rs6544066	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6726709	0.87[TSI][hapmap]
rs67467920	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71398224	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72792829	0.88[ASN][1000 genomes]
rs74177070	0.92[ASN][1000 genomes]
rs7568510	0.85[ASN][1000 genomes]
rs7570547	0.87[ASN][1000 genomes]
rs7584565	0.85[ASN][1000 genomes]
rs9309004	0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2268987	QPCT	cis	lymphoblastoid	seeQTL
rs2268987	EIF2AK2	cis	parietal	SCAN
rs2268987	CEBPZ	cis	lymphoblastoid	seeQTL
rs2268987	ATL2	cis	cerebellum	SCAN
rs2268987	QPCT	cis	parietal	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
3	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:37502800-37533800	Weak transcription	Lung	lung
6	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
7	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
10	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
11	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
13	chr2:37513600-37543200	Weak transcription	NHLF	lung
14	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
17	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:37518800-37539000	Weak transcription	Fetal Lung	lung
21	chr2:37518800-37545400	Weak transcription	NH-A	brain
22	chr2:37519000-37534200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:37519000-37549400	Weak transcription	HSMM	muscle
24	chr2:37519200-37543800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:37519200-37545600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:37520200-37543400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr2:37520200-37545400	Weak transcription	Ovary	ovary
28	chr2:37520200-37549600	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:37520400-37539200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:37520400-37549600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr2:37520400-37550400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr2:37520600-37534000	Weak transcription	HepG2	liver
33	chr2:37523000-37534200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr2:37523400-37537800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:37526800-37534600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr2:37527200-37533800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr2:37529200-37534400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:37529200-37534400	Weak transcription	NHEK	skin
39	chr2:37529200-37537800	Weak transcription	Aorta	Aorta
40	chr2:37529200-37540200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:37529200-37540400	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:37529400-37534400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:37529400-37534400	Weak transcription	A549	lung
44	chr2:37529400-37545600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:37529600-37534600	Weak transcription	HUVEC	blood vessel
46	chr2:37529600-37545600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr2:37529600-37545600	Weak transcription	NHDF-Ad	bronchial
48	chr2:37530400-37542600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr2:37530400-37548400	Weak transcription	K562	blood
50	chr2:37530600-37539400	Weak transcription	Primary B cells from cord blood	blood

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