The 2.0 version of rSNPBase

Variant report

Variant rs2270534
Chromosome Location chr1:220970297-220970298
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220961000-220971200 Weak transcription Spleen Spleen
2 chr1:220961000-220973400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:220961000-220976800 Weak transcription Ovary ovary
4 chr1:220961000-220978200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:220961000-220982200 Weak transcription Brain Substantia Nigra brain
6 chr1:220961200-220971200 Weak transcription Stomach Smooth Muscle stomach
7 chr1:220961400-220970600 Weak transcription H1 Cell Line embryonic stem cell
8 chr1:220961400-220983800 Weak transcription Esophagus oesophagus
9 chr1:220961600-220970600 Weak transcription Fetal Brain Female brain
10 chr1:220961600-220971000 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr1:220961600-220975000 Weak transcription Brain Angular Gyrus brain
12 chr1:220961600-220975200 Weak transcription Brain Cingulate Gyrus brain
13 chr1:220961600-220983600 Weak transcription Pancreas Pancrea
14 chr1:220961800-220971600 Weak transcription Brain Germinal Matrix brain
15 chr1:220961800-220972000 Weak transcription Rectal Smooth Muscle rectum
16 chr1:220961800-220974200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr1:220961800-220979800 Weak transcription Right Atrium heart
18 chr1:220961800-220981400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr1:220961800-220981600 Weak transcription Fetal Muscle Trunk muscle
20 chr1:220961800-220983800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:220962000-220975000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:220964000-220974000 Weak transcription H9 Cell Line embryonic stem cell
23 chr1:220964800-220970600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:220964800-220972000 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:220964800-220978400 Weak transcription Primary B cells from cord blood blood
26 chr1:220965000-220972600 Weak transcription Colonic Mucosa Colon
27 chr1:220965000-220972600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:220965000-220980000 Weak transcription Fetal Muscle Leg muscle
29 chr1:220965200-220971000 Weak transcription Colon Smooth Muscle Colon
30 chr1:220965200-220971600 Weak transcription Right Ventricle heart
31 chr1:220965200-220979600 Weak transcription Gastric stomach
32 chr1:220965200-220985400 Weak transcription Aorta Aorta
33 chr1:220965400-220970400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:220965400-220970800 Weak transcription Fetal Brain Male brain
35 chr1:220965400-220971200 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr1:220965400-220971600 Weak transcription Left Ventricle heart
37 chr1:220965400-220972400 Weak transcription Brain Anterior Caudate brain
38 chr1:220965400-220982200 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:220965600-220971000 Weak transcription Placenta Placenta
40 chr1:220965600-220983600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:220965800-220971800 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:220965800-220983800 Weak transcription Fetal Lung lung
43 chr1:220966400-220971000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:220966400-220996000 Strong transcription Monocytes-CD14+_RO01746 blood
45 chr1:220966600-220982400 Strong transcription Primary monocytes fromperipheralblood blood
46 chr1:220966800-220985200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:220967600-220976400 Strong transcription Adipose Nuclei Adipose
48 chr1:220967600-220983800 Weak transcription Psoas Muscle Psoas
49 chr1:220968200-220977200 Strong transcription Primary neutrophils fromperipheralblood blood
50 chr1:220968600-220970400 Enhancers Liver Liver

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Last update: Aug 31, 2015