Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:81605147..81607910-chr14:81685066..81687291,3	MCF-7	breast:
2	chr14:81606137..81608876-chr14:81635959..81638570,2	MCF-7	breast:
3	chr14:81604110..81606545-chr14:81606669..81609558,2	K562	blood:
4	chr14:81606418..81608922-chr14:81611798..81613864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction
ENSG00000165417	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131452	0.83[ASN][1000 genomes]
rs10131719	0.83[ASN][1000 genomes]
rs10133928	0.82[ASN][1000 genomes]
rs10142430	0.87[ASN][1000 genomes]
rs10147462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323385	0.85[ASN][1000 genomes]
rs12323554	0.83[AMR][1000 genomes]
rs17111530	0.91[ASN][1000 genomes]
rs2284737	0.87[ASN][1000 genomes]
rs2300537	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28491084	0.81[ASN][1000 genomes]
rs28507187	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28640259	0.81[ASN][1000 genomes]
rs28661095	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28701878	0.87[ASN][1000 genomes]
rs28730923	0.82[ASN][1000 genomes]
rs3783938	0.87[ASN][1000 genomes]
rs3783940	0.87[ASN][1000 genomes]
rs59500227	0.87[ASN][1000 genomes]
rs59645772	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574628	0.87[ASN][1000 genomes]
rs7150881	0.87[ASN][1000 genomes]
rs72627193	0.87[ASN][1000 genomes]
rs72627194	0.87[ASN][1000 genomes]
rs72627195	0.87[ASN][1000 genomes]
rs72627196	0.87[ASN][1000 genomes]
rs72627197	0.91[ASN][1000 genomes]
rs72627198	0.90[ASN][1000 genomes]
rs8020489	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
2	chr14:81600200-81611000	Weak transcription	Liver	Liver
3	chr14:81600800-81609400	Weak transcription	Fetal Thymus	thymus
4	chr14:81604400-81609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:81606000-81607800	Strong transcription	Dnd41	blood

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