Variant report

Variant	rs2275011
Chromosome Location	chr14:65665376-65665377
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133129	0.95[ASN][1000 genomes]
rs10144720	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10146247	0.85[CHB][hapmap]
rs10146330	0.85[CHB][hapmap]
rs11158584	0.85[CEU][hapmap]
rs1531694	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2101084	0.85[CEU][hapmap]
rs2275012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28440787	0.95[ASN][1000 genomes]
rs28475743	0.86[ASN][1000 genomes]
rs28557069	0.90[ASN][1000 genomes]
rs28660318	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28698923	0.95[ASN][1000 genomes]
rs4299072	0.82[CHB][hapmap]
rs59307701	0.95[ASN][1000 genomes]
rs60242721	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65664400-65665600	Enhancers	GM12878-XiMat	blood
2	chr14:65665000-65665600	Enhancers	Fetal Intestine Large	intestine
3	chr14:65665000-65665600	Enhancers	Fetal Intestine Small	intestine
4	chr14:65665000-65665600	Enhancers	HepG2	liver
5	chr14:65665000-65667600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:65665200-65665600	Enhancers	Fetal Heart	heart
7	chr14:65665200-65665600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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