Variant report

Variant	rs2277557
Chromosome Location	chr15:61491878-61491879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:61490526..61492934-chr15:61497231..61498759,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025676	0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10519115	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11071592	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437877	1.00[CEU][hapmap];0.86[CHD][hapmap];0.88[MEX][hapmap]
rs12441507	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12441702	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442490	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12593777	0.93[CHB][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437545	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1437546	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1529991	0.83[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16943758	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16943763	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1813147	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28611274	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28716779	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28754581	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4517733	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8035563	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:61467400-61497600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:61475200-61492000	Weak transcription	Ovary	ovary
3	chr15:61479800-61519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:61485200-61492000	Weak transcription	Left Ventricle	heart
5	chr15:61486200-61497400	Weak transcription	Lung	lung
6	chr15:61487000-61492200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:61488400-61493200	Enhancers	Brain Germinal Matrix	brain
8	chr15:61488600-61492600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:61488800-61492000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:61489200-61497400	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:61489600-61497400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:61489600-61499000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:61489800-61492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:61489800-61493600	Enhancers	Brain Angular Gyrus	brain
15	chr15:61489800-61503800	Weak transcription	Fetal Stomach	stomach
16	chr15:61490200-61497200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:61490800-61492000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:61491000-61492200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:61491000-61492200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:61491000-61492600	Enhancers	Psoas Muscle	Psoas
21	chr15:61491200-61492200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:61491200-61492200	Enhancers	Colon Smooth Muscle	Colon
23	chr15:61491200-61493600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:61491200-61497400	Weak transcription	Right Atrium	heart
25	chr15:61491400-61492000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:61491400-61492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:61491400-61493000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:61491400-61493600	Enhancers	Fetal Lung	lung
29	chr15:61491400-61503000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:61491600-61492200	Enhancers	Adipose Nuclei	Adipose
31	chr15:61491600-61493000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr15:61491800-61492200	Enhancers	Brain Substantia Nigra	brain
33	chr15:61491800-61492400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:61491800-61492400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:61491800-61493000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:61491800-61493000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr15:61491800-61493600	Enhancers	Brain Anterior Caudate	brain

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