Variant report

Variant	rs2277891
Chromosome Location	chr15:77197581-77197582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
2	chr15:77196194..77198493-chr15:77235491..77237833,2	K562	blood:
3	chr15:77195708..77198409-chr15:77360659..77363583,2	K562	blood:
4	chr15:77196272..77198559-chr15:77223364..77225357,2	K562	blood:
5	chr15:77196182..77198169-chr15:77222869..77226186,3	K562	blood:
6	chr15:77195051..77197848-chr15:77221697..77224553,2	MCF-7	breast:
7	chr15:77195486..77197689-chr15:77712877..77715018,2	K562	blood:
8	chr15:77194744..77199863-chr15:77220881..77225601,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction
ENSG00000117906	Chromatin interaction
ENSG00000269951	Chromatin interaction
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10519151	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16968467	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16968532	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16968536	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16968557	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2137309	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2221866	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs280025	0.84[ASN][1000 genomes]
rs3825892	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56116678	0.84[AMR][1000 genomes]
rs58908956	0.84[ASN][1000 genomes]
rs59570104	0.84[AMR][1000 genomes]
rs59897136	0.84[AMR][1000 genomes]
rs60963081	0.84[AMR][1000 genomes]
rs62027262	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62027263	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62027268	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027269	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027270	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027271	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027272	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027273	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62027274	0.93[EUR][1000 genomes]
rs62027276	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62027279	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028171	0.84[AMR][1000 genomes]
rs62028172	0.84[AMR][1000 genomes]
rs62028173	0.84[AMR][1000 genomes]
rs62028174	0.84[AMR][1000 genomes]
rs62028177	0.84[AMR][1000 genomes]
rs62028724	0.84[ASN][1000 genomes]
rs62028726	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62028727	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028729	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028730	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028733	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028734	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028735	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028737	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62028743	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029174	0.92[EUR][1000 genomes]
rs62029175	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029178	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029179	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029180	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029182	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029183	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029184	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029186	0.92[EUR][1000 genomes]
rs62029187	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029188	0.92[EUR][1000 genomes]
rs62029189	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029190	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029192	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029194	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029195	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029196	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029197	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029230	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029231	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029233	0.92[EUR][1000 genomes]
rs62029234	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029235	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029236	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029237	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029239	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029241	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029245	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62029247	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62029248	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62029249	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62029250	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164654	0.95[EUR][1000 genomes]
rs7171104	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7179043	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73455381	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73457158	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73457161	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8034637	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8042889	0.84[AMR][1000 genomes]
rs8043385	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77195400-77198600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:77196200-77198200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:77196400-77197600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:77196400-77197800	Active TSS	Fetal Brain Male	brain
5	chr15:77196400-77198000	Active TSS	Stomach Smooth Muscle	stomach
6	chr15:77196400-77198200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77196400-77198200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:77196600-77198000	Active TSS	Fetal Intestine Small	intestine
9	chr15:77196600-77198000	Active TSS	Fetal Stomach	stomach
10	chr15:77196600-77198200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr15:77196600-77198200	Active TSS	Brain Substantia Nigra	brain
12	chr15:77196600-77198400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:77196800-77197600	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr15:77196800-77197600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:77196800-77197600	Flanking Active TSS	Colonic Mucosa	Colon
16	chr15:77196800-77197800	Active TSS	Pancreas	Pancrea
17	chr15:77196800-77197800	Active TSS	Osteobl	bone
18	chr15:77196800-77198000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:77196800-77198000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:77196800-77198000	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr15:77196800-77198000	Active TSS	Left Ventricle	heart
22	chr15:77196800-77198000	Active TSS	Lung	lung
23	chr15:77196800-77198000	Active TSS	Rectal Smooth Muscle	rectum
24	chr15:77196800-77198000	Active TSS	NHDF-Ad	bronchial
25	chr15:77196800-77198200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr15:77196800-77198200	Active TSS	H9 Cell Line	embryonic stem cell
27	chr15:77196800-77198200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:77196800-77198200	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr15:77196800-77198400	Active TSS	Fetal Kidney	kidney
30	chr15:77196800-77198400	Active TSS	Ovary	ovary
31	chr15:77196800-77198600	Active TSS	Aorta	Aorta
32	chr15:77196800-77198800	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr15:77197000-77197600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr15:77197000-77197600	Transcr. at gene 5' and 3'	Right Atrium	heart
35	chr15:77197000-77197800	Active TSS	Small Intestine	intestine
36	chr15:77197000-77198000	Active TSS	H1 Cell Line	embryonic stem cell
37	chr15:77197000-77198000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:77197000-77198000	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr15:77197000-77198000	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr15:77197000-77198000	Active TSS	Brain Angular Gyrus	brain
41	chr15:77197000-77198000	Active TSS	Brain Cingulate Gyrus	brain
42	chr15:77197000-77198000	Active TSS	Brain Hippocampus Middle	brain
43	chr15:77197000-77198000	Active TSS	Colon Smooth Muscle	Colon
44	chr15:77197000-77198000	Active TSS	Fetal Intestine Large	intestine
45	chr15:77197000-77198000	Active TSS	Gastric	stomach
46	chr15:77197000-77198000	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr15:77197000-77198000	Active TSS	A549	lung
48	chr15:77197000-77198000	Active TSS	HSMMtube	muscle
49	chr15:77197000-77198200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:77197000-77198200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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