Variant report

Variant	rs2281992
Chromosome Location	chr13:51578407-51578408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51562300..51564075-chr13:51577991..51579805,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-7	chr13:51578389-51578490	NONHSAT033881

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11617400	0.94[MEX][hapmap]
rs2025945	0.89[ASW][hapmap];0.96[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs3790021	0.94[MEX][hapmap]
rs7322013	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs7332630	0.87[CEU][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7334102	0.89[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7996733	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7996960	0.92[CEU][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2281992	FNDC3A	cis	cerebellum	SCAN
rs2281992	GNPDA1	cis	Cerebellum	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
4	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:51575600-51578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:51575600-51579000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:51575600-51579200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:51575600-51579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
11	chr13:51576000-51579400	Weak transcription	Fetal Thymus	thymus
12	chr13:51577000-51578800	Weak transcription	Fetal Intestine Small	intestine
13	chr13:51577800-51580200	Enhancers	Brain Germinal Matrix	brain
14	chr13:51577800-51581000	Enhancers	Fetal Muscle Leg	muscle
15	chr13:51578000-51579200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr13:51578200-51578600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:51578200-51578800	Enhancers	Primary hematopoietic stem cells	blood
18	chr13:51578200-51578800	Active TSS	Monocytes-CD14+_RO01746	blood
19	chr13:51578200-51580200	Enhancers	Fetal Muscle Trunk	muscle
20	chr13:51578200-51581800	Enhancers	Fetal Intestine Large	intestine
21	chr13:51578400-51578600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:51578400-51578800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr13:51578400-51578800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:51578400-51579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:51578400-51579800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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