Variant report

Variant	rs2282379
Chromosome Location	chr1:225578019-225578020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10495240	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs10753404	0.82[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10753405	0.82[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10799301	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10915817	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11580119	0.80[CEU][hapmap]
rs12028429	1.00[CEU][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12073561	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12134158	0.83[EUR][1000 genomes]
rs1538933	0.82[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2406109	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3856154	0.88[ASW][hapmap];0.95[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3856155	0.82[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3949347	0.82[CEU][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs5015446	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6426067	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs6679430	0.95[CEU][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7539172	0.87[CEU][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap]
rs947035	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs947036	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs947037	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs950210	0.95[CEU][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2282379	C1orf95	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:225567200-225585000	Weak transcription	NHEK	skin
4	chr1:225568200-225583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
8	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
9	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
10	chr1:225571400-225583400	Weak transcription	Aorta	Aorta
11	chr1:225571400-225585000	Weak transcription	Gastric	stomach
12	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
13	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:225576000-225583600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:225576200-225583800	Weak transcription	Primary B cells from cord blood	blood
16	chr1:225576200-225585000	Weak transcription	Fetal Stomach	stomach
17	chr1:225576200-225585200	Weak transcription	Osteobl	bone
18	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:225576400-225583400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:225576400-225583600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:225576400-225585000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:225576400-225586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:225576400-225586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:225576600-225582200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:225576800-225583800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:225576800-225585000	Weak transcription	Lung	lung
28	chr1:225577200-225578200	Enhancers	Fetal Thymus	thymus
29	chr1:225577400-225578200	Enhancers	Thymus	Thymus
30	chr1:225577600-225578200	Strong transcription	Fetal Intestine Small	intestine
31	chr1:225577800-225578200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:225577800-225580200	Strong transcription	Fetal Brain Female	brain
33	chr1:225577800-225580200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr1:225577800-225582600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:225577800-225583400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:225577800-225585000	Weak transcription	Esophagus	oesophagus
37	chr1:225577800-225585200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:225578000-225583400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:225578000-225585000	Weak transcription	Adipose Nuclei	Adipose
40	chr1:225578000-225588600	Weak transcription	Fetal Kidney	kidney
41	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links