Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10251431	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10258445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap]
rs10808227	0.81[CHD][hapmap]
rs10954138	0.92[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11971186	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs1204516	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs1204520	0.82[CEU][hapmap]
rs1204526	0.81[MEX][hapmap];0.93[TSI][hapmap]
rs12534101	0.91[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12670445	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419448	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2157752	0.92[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2283074	0.82[CHB][hapmap]
rs2299521	0.88[EUR][1000 genomes]
rs3808145	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3808148	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs3919444	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs412791	0.91[GIH][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs62470209	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916613	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs9649507	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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