Variant report

Variant	rs2285533
Chromosome Location	chr7:104546299-104546300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104545063..104548248-chr7:104548841..104552700,4	MCF-7	breast:
2	chr7:104545801..104548319-chr7:104550408..104552472,2	K562	blood:

Variant related genes	Relation type
ENSG00000243352	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10216243	0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10226456	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10226802	0.85[EUR][1000 genomes]
rs10235696	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10236552	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10237433	0.86[CHB][hapmap];0.82[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238498	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243336	0.85[EUR][1000 genomes]
rs10243529	0.85[EUR][1000 genomes]
rs10247246	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10247369	0.85[JPT][hapmap]
rs10250365	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10253341	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10257360	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259925	0.91[CHB][hapmap];0.85[EUR][1000 genomes]
rs10262655	0.85[EUR][1000 genomes]
rs10266362	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272668	0.85[EUR][1000 genomes]
rs10273609	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10274240	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280365	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10281485	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953454	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953455	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953457	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12534673	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12535201	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12537945	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12670275	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672211	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705281	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs12705282	0.85[EUR][1000 genomes]
rs12705285	0.85[EUR][1000 genomes]
rs13225632	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13228977	0.81[ASN][1000 genomes]
rs1468813	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs17777379	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs17777439	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28478615	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28546781	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28587189	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34083033	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34171467	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34439336	0.85[EUR][1000 genomes]
rs35146170	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs35324592	0.85[EUR][1000 genomes]
rs35337480	0.85[EUR][1000 genomes]
rs35756879	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35894637	0.92[ASN][1000 genomes]
rs35988800	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4351347	0.80[ASN][1000 genomes]
rs6949139	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963979	0.90[CHB][hapmap]
rs6968540	0.90[ASN][1000 genomes]
rs71562620	0.85[EUR][1000 genomes]
rs7779117	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7781864	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
2	chr7:104538200-104546600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:104542400-104552400	Weak transcription	Pancreas	Pancrea
4	chr7:104545200-104546600	Strong transcription	Fetal Intestine Large	intestine
5	chr7:104546000-104546400	Weak transcription	Fetal Intestine Small	intestine

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