Variant report

Variant	rs2286083
Chromosome Location	chr7:38800807-38800808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10232480	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11978728	0.85[ASN][1000 genomes]
rs12538785	0.98[ASN][1000 genomes]
rs12701660	0.88[ASN][1000 genomes]
rs13244313	0.86[ASN][1000 genomes]
rs1978170	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2074656	0.86[ASN][1000 genomes]
rs2240350	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240355	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286081	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2286085	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286090	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286092	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286095	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286097	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286099	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286100	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286102	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2392595	0.85[ASN][1000 genomes]
rs3207255	0.88[ASN][1000 genomes]
rs3779126	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3801142	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801144	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4720298	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4720299	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723783	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462858	0.85[ASN][1000 genomes]
rs6462859	0.87[ASN][1000 genomes]
rs6462861	0.87[ASN][1000 genomes]
rs6462862	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961672	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7785056	0.81[ASN][1000 genomes]
rs7794371	0.80[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
3	chr7:38759200-38810200	Weak transcription	A549	lung
4	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
6	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:38763400-38828800	Weak transcription	HepG2	liver
8	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
10	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:38780800-38803600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:38780800-38806000	Weak transcription	Fetal Brain Female	brain
15	chr7:38780800-38828800	Weak transcription	Gastric	stomach
16	chr7:38781400-38805800	Weak transcription	Brain Substantia Nigra	brain
17	chr7:38784400-38805800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:38784600-38805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:38784800-38835000	Weak transcription	NHEK	skin
20	chr7:38785000-38815800	Weak transcription	NHLF	lung
21	chr7:38785600-38834600	Weak transcription	HMEC	breast
22	chr7:38785600-38835000	Weak transcription	NH-A	brain
23	chr7:38786600-38805800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:38786600-38805800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:38786600-38806000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:38789000-38818800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr7:38789600-38811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:38789600-38816800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr7:38791200-38802600	Weak transcription	Brain Anterior Caudate	brain
31	chr7:38791400-38812600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:38791600-38801600	Weak transcription	HSMM	muscle
33	chr7:38791800-38801600	Weak transcription	NHDF-Ad	bronchial
34	chr7:38791800-38813400	Weak transcription	Osteobl	bone
35	chr7:38791800-38814200	Weak transcription	K562	blood
36	chr7:38792000-38802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:38792000-38802800	Weak transcription	Fetal Thymus	thymus
38	chr7:38792000-38810800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:38792000-38812600	Weak transcription	Brain Germinal Matrix	brain
40	chr7:38792200-38802400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:38792200-38803600	Weak transcription	Thymus	Thymus
42	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
43	chr7:38792400-38821800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr7:38793200-38802800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:38793200-38802800	Weak transcription	Colonic Mucosa	Colon
46	chr7:38793200-38805800	Weak transcription	Spleen	Spleen
47	chr7:38793200-38806200	Weak transcription	HSMMtube	muscle
48	chr7:38793200-38818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:38793400-38803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:38793400-38803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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