Variant report

Variant	rs2289693
Chromosome Location	chr15:79215311-79215312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79213555..79216067-chr15:79295400..79297888,2	K562	blood:
2	chr15:79208450..79211026-chr15:79212456..79216511,4	K562	blood:
3	chr15:79213984..79216609-chr15:79226646..79228838,2	K562	blood:

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11853058	0.82[AFR][1000 genomes]
rs11854790	0.92[AFR][1000 genomes]
rs11857815	0.92[AFR][1000 genomes]
rs11857844	0.87[AFR][1000 genomes]
rs11857964	0.96[AFR][1000 genomes]
rs12591571	1.00[EUR][1000 genomes]
rs12592959	1.00[EUR][1000 genomes]
rs12593083	1.00[EUR][1000 genomes]
rs16970296	1.00[EUR][1000 genomes]
rs1968582	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2082764	0.96[AFR][1000 genomes]
rs2289690	1.00[EUR][1000 genomes]
rs2289694	1.00[EUR][1000 genomes]
rs4283202	0.96[AFR][1000 genomes]
rs60132959	0.81[AFR][1000 genomes]
rs61433603	0.96[AFR][1000 genomes]
rs6495350	0.92[AFR][1000 genomes]
rs7166142	0.96[AFR][1000 genomes]
rs7172767	0.96[AFR][1000 genomes]
rs7180086	0.96[AFR][1000 genomes]
rs8023320	0.88[AFR][1000 genomes]
rs8025166	0.92[AFR][1000 genomes]
rs8027614	0.92[AFR][1000 genomes]
rs8028433	0.92[AFR][1000 genomes]
rs8039160	0.92[AFR][1000 genomes]
rs894785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:79178200-79219400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:79190000-79222200	Strong transcription	Thymus	Thymus
5	chr15:79199600-79218800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:79199800-79229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:79203600-79231000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:79204800-79219600	Strong transcription	Fetal Brain Female	brain
9	chr15:79205000-79219000	Weak transcription	Fetal Kidney	kidney
10	chr15:79205400-79227800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:79205800-79223600	Weak transcription	Stomach Mucosa	stomach
12	chr15:79208200-79221800	Weak transcription	HMEC	breast
13	chr15:79208200-79223000	Weak transcription	Right Atrium	heart
14	chr15:79208400-79220400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:79208400-79221000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:79208600-79223000	Weak transcription	Hela-S3	cervix
17	chr15:79209200-79215400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:79209400-79216200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:79209400-79218000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:79209400-79220200	Strong transcription	Fetal Thymus	thymus
21	chr15:79209600-79220200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:79209600-79220200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:79209600-79220600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:79209800-79220400	Strong transcription	Adipose Nuclei	Adipose
25	chr15:79209800-79225800	Strong transcription	Fetal Stomach	stomach
26	chr15:79210000-79215800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:79210000-79217200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:79210000-79226600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr15:79210000-79227200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:79210200-79215400	Strong transcription	Osteobl	bone
31	chr15:79210200-79215600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:79210200-79217000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:79210200-79218000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:79210200-79218200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr15:79210200-79219800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:79210200-79227000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:79210200-79228200	Strong transcription	GM12878-XiMat	blood
38	chr15:79210400-79216200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:79210400-79220200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:79210400-79220400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:79210400-79220600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:79210400-79222200	Strong transcription	Liver	Liver
43	chr15:79210400-79226200	Strong transcription	Fetal Intestine Small	intestine
44	chr15:79210400-79228000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:79210400-79230200	Strong transcription	Fetal Intestine Large	intestine
46	chr15:79210600-79220200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:79210800-79215400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:79210800-79215600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:79211000-79216600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:79211000-79219400	Strong transcription	Stomach Smooth Muscle	stomach

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