Variant report

Variant	rs2291581
Chromosome Location	chr6:150922641-150922642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150914794..150917748-chr6:150922118..150924160,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62432654	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150920400-150923000	Active TSS	Right Atrium	heart
2	chr6:150920400-150923200	Active TSS	Thymus	Thymus
3	chr6:150920800-150922800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150921000-150923000	Active TSS	Lung	lung
5	chr6:150921800-150922800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
6	chr6:150922200-150922800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150922200-150922800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
8	chr6:150922200-150922800	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:150922200-150923000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:150922200-150923000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr6:150922200-150927600	Weak transcription	Spleen	Spleen
12	chr6:150922200-150930600	Weak transcription	Aorta	Aorta
13	chr6:150922400-150922800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:150922400-150922800	Enhancers	Brain Angular Gyrus	brain
15	chr6:150922400-150922800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:150922400-150922800	Flanking Active TSS	Fetal Kidney	kidney
17	chr6:150922400-150922800	Bivalent Enhancer	GM12878-XiMat	blood
18	chr6:150922400-150923000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:150922400-150923000	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr6:150922400-150923000	Enhancers	Placenta	Placenta
21	chr6:150922400-150923000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr6:150922400-150923400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:150922400-150923800	Flanking Active TSS	Fetal Thymus	thymus
24	chr6:150922400-150924800	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:150922400-150927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:150922400-150927600	Weak transcription	Brain Substantia Nigra	brain
27	chr6:150922400-150927600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
29	chr6:150922600-150922800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:150922600-150922800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
31	chr6:150922600-150922800	Active TSS	Adipose Nuclei	Adipose
32	chr6:150922600-150922800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr6:150922600-150922800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr6:150922600-150922800	Bivalent/Poised TSS	Fetal Lung	lung
35	chr6:150922600-150922800	Bivalent Enhancer	Psoas Muscle	Psoas
36	chr6:150922600-150923000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr6:150922600-150923000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:150922600-150923000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:150922600-150923000	Enhancers	HMEC	breast
40	chr6:150922600-150923000	Bivalent Enhancer	HUVEC	blood vessel
41	chr6:150922600-150923200	Enhancers	Fetal Heart	heart
42	chr6:150922600-150923600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:150922600-150927800	Weak transcription	Small Intestine	intestine
44	chr6:150922600-150928000	Weak transcription	Liver	Liver

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