Variant report

Variant	rs2292714
Chromosome Location	chr15:58465754-58465755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58464019..58467002-chr15:58469139..58471766,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1317851	0.88[EUR][1000 genomes]
rs16939839	0.94[EUR][1000 genomes]
rs17240643	0.85[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17240650	0.88[CEU][hapmap];0.83[CHB][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17240671	0.91[EUR][1000 genomes]
rs17821086	0.95[EUR][1000 genomes]
rs17821117	0.88[CEU][hapmap];0.83[CHB][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17821135	0.81[EUR][1000 genomes]
rs1814461	0.88[EUR][1000 genomes]
rs2271678	0.88[CEU][hapmap];0.83[CHB][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2414537	0.88[EUR][1000 genomes]
rs2414538	0.88[EUR][1000 genomes]
rs2414539	0.88[EUR][1000 genomes]
rs2414543	0.94[EUR][1000 genomes]
rs2414544	0.94[EUR][1000 genomes]
rs2414545	0.94[EUR][1000 genomes]
rs3784248	0.92[EUR][1000 genomes]
rs3784255	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3825777	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4643260	0.82[EUR][1000 genomes]
rs55672049	0.81[EUR][1000 genomes]
rs55808100	0.82[EUR][1000 genomes]
rs55832939	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55860231	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55885730	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56099208	0.85[EUR][1000 genomes]
rs56141765	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61113628	0.88[EUR][1000 genomes]
rs66717621	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66881380	0.95[EUR][1000 genomes]
rs66896776	0.95[EUR][1000 genomes]
rs67670862	0.95[EUR][1000 genomes]
rs67683432	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7161943	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7165818	0.88[EUR][1000 genomes]
rs7165997	0.88[EUR][1000 genomes]
rs7179531	0.95[EUR][1000 genomes]
rs7181378	0.94[EUR][1000 genomes]
rs72737450	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72743586	0.94[EUR][1000 genomes]
rs7496709	0.87[EUR][1000 genomes]
rs935204	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2292714	CGNL1	cis	parietal	SCAN
rs2292714	LEO1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58454800-58471400	Weak transcription	Spleen	Spleen
3	chr15:58458400-58477800	Strong transcription	Liver	Liver
4	chr15:58461800-58473000	Weak transcription	Pancreas	Pancrea
5	chr15:58462400-58467600	Weak transcription	K562	blood
6	chr15:58464000-58468400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:58465600-58467400	Strong transcription	Primary monocytes fromperipheralblood	blood

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