Variant report

Variant	rs2295106
Chromosome Location	chr14:68246855-68246856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68234348..68235984-chr14:68246542..68249251,2	MCF-7	breast:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10130919	0.86[AMR][1000 genomes]
rs10131048	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10132318	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10133239	0.86[AMR][1000 genomes]
rs10135927	0.87[AMR][1000 genomes]
rs10137614	0.85[AMR][1000 genomes]
rs10137930	0.85[AMR][1000 genomes]
rs10141638	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs10146380	0.85[AMR][1000 genomes]
rs10150007	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1040598	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10483805	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10873208	0.86[AMR][1000 genomes]
rs11158693	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11158695	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158697	0.86[AMR][1000 genomes]
rs11620947	0.81[AMR][1000 genomes]
rs11621019	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11621258	1.00[JPT][hapmap]
rs11622521	0.82[AMR][1000 genomes]
rs11622535	0.85[AMR][1000 genomes]
rs11623756	0.85[AMR][1000 genomes]
rs11626332	1.00[JPT][hapmap]
rs11626590	0.83[ASN][1000 genomes]
rs11626769	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11626778	0.85[AMR][1000 genomes]
rs11627100	0.86[AMR][1000 genomes]
rs11627417	0.86[AMR][1000 genomes]
rs11627565	0.85[AMR][1000 genomes]
rs11844492	0.86[AMR][1000 genomes]
rs12432558	1.00[JPT][hapmap]
rs12433710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12433779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12435554	1.00[JPT][hapmap]
rs12586329	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12588401	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12886915	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12891047	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12891164	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12892221	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12893157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12896666	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1543391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17783094	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17783124	0.85[AMR][1000 genomes]
rs17783160	0.86[CEU][hapmap];0.86[AMR][1000 genomes]
rs1810523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181561	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181562	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181563	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs181564	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181565	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181566	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181567	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181570	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181572	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181574	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181575	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs181576	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1955470	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1956345	0.86[AMR][1000 genomes]
rs1956346	0.81[AMR][1000 genomes]
rs1956347	0.86[AMR][1000 genomes]
rs1956348	0.86[AMR][1000 genomes]
rs1964828	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2235962	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2235963	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2235965	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2235966	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2235967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295108	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28373844	0.85[AMR][1000 genomes]
rs28604984	0.85[AMR][1000 genomes]
rs28623567	0.85[AMR][1000 genomes]
rs2874131	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2874132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2874133	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs35272075	0.87[AMR][1000 genomes]
rs3742879	1.00[JPT][hapmap]
rs4143685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4284565	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4569184	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902517	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4902518	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902519	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55854324	0.83[ASN][1000 genomes]
rs55999745	0.86[AMR][1000 genomes]
rs7142433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7143196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7143496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145044	1.00[JPT][hapmap]
rs7149482	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7150705	1.00[JPT][hapmap]
rs7150903	1.00[JPT][hapmap]
rs7151495	1.00[JPT][hapmap]
rs7154635	0.85[AMR][1000 genomes]
rs7159109	0.85[AMR][1000 genomes]
rs7159622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159982	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7160196	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72723196	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72723202	0.83[ASN][1000 genomes]
rs72725103	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72725114	0.87[AMR][1000 genomes]
rs767972	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8003431	0.85[AMR][1000 genomes]
rs8004611	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8011120	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8011690	0.81[AMR][1000 genomes]
rs8012974	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8017013	0.86[AMR][1000 genomes]
rs8018709	0.85[AMR][1000 genomes]
rs932555	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68206200-68251000	Weak transcription	K562	blood
2	chr14:68212400-68282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68213000-68280800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:68213400-68281200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:68213600-68279600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:68213800-68280600	Strong transcription	Liver	Liver
7	chr14:68214000-68258200	Strong transcription	Brain Germinal Matrix	brain
8	chr14:68214600-68281000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:68214800-68266800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:68214800-68276200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr14:68214800-68280200	Strong transcription	Fetal Thymus	thymus
12	chr14:68216600-68267200	Strong transcription	Fetal Stomach	stomach
13	chr14:68220000-68251200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr14:68220200-68273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:68223800-68257600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr14:68224800-68281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:68225000-68281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:68226000-68248800	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:68226000-68257600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr14:68226200-68257600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:68226200-68257600	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr14:68226200-68281000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:68226400-68257600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:68226400-68257600	Strong transcription	Brain Anterior Caudate	brain
25	chr14:68226400-68257600	Strong transcription	Brain Cingulate Gyrus	brain
26	chr14:68226400-68257600	Strong transcription	Brain Hippocampus Middle	brain
27	chr14:68226400-68257600	Strong transcription	Fetal Lung	lung
28	chr14:68226400-68257600	Strong transcription	Ovary	ovary
29	chr14:68226400-68257800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:68226400-68257800	Strong transcription	Primary T cells from cord blood	blood
31	chr14:68226400-68258000	Strong transcription	Dnd41	blood
32	chr14:68226400-68258400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:68226400-68258600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:68226400-68262200	Strong transcription	Fetal Brain Female	brain
35	chr14:68226400-68272800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:68226400-68273200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:68226400-68276000	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:68226400-68277800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:68226400-68278200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:68226400-68279800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:68226400-68280600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:68226400-68280800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:68226400-68280800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr14:68226400-68281000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:68226600-68251600	Strong transcription	Left Ventricle	heart
46	chr14:68226600-68251800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:68226600-68257600	Strong transcription	Thymus	Thymus
48	chr14:68226800-68257600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr14:68226800-68257600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:68226800-68257800	Strong transcription	Lung	lung

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