Variant report

Variant rs2296054
Chromosome Location chr9:677141-677142
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:653400-698000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr9:670800-677200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr9:670800-677600 Weak transcription Gastric stomach
4 chr9:670800-706800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr9:672000-677200 Enhancers Brain Hippocampus Middle brain
6 chr9:673200-677400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr9:673600-677800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr9:673600-677800 Weak transcription Pancreas Pancrea
9 chr9:673800-677600 Enhancers iPS-20b Cell Line embryonic stem cell
10 chr9:674000-677200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr9:674000-677200 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr9:674000-677600 Weak transcription Right Ventricle heart
13 chr9:674200-677200 Weak transcription Right Atrium heart
14 chr9:674200-677200 Weak transcription Stomach Smooth Muscle stomach
15 chr9:674400-677200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr9:674400-677200 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr9:674400-677400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr9:674400-677400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr9:674400-677400 Weak transcription Aorta Aorta
20 chr9:674400-677400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr9:674400-677600 Weak transcription Left Ventricle heart
22 chr9:674400-677600 Weak transcription Psoas Muscle Psoas
23 chr9:674400-677600 Weak transcription Thymus Thymus
24 chr9:674400-677800 Weak transcription Fetal Thymus thymus
25 chr9:674400-682800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr9:674400-682800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr9:674400-693200 Weak transcription Primary T cells from cord blood blood
28 chr9:674600-677200 Weak transcription Brain Substantia Nigra brain
29 chr9:674600-683200 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr9:675000-677200 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr9:675400-677200 Enhancers Brain Anterior Caudate brain
32 chr9:675400-677400 Enhancers Dnd41 blood
33 chr9:675400-678000 Enhancers Cortex derived primary cultured neurospheres brain
34 chr9:675600-677600 Enhancers HUES48 Cell Line embryonic stem cell
35 chr9:675600-678000 Enhancers HUES64 Cell Line embryonic stem cell
36 chr9:675800-677200 Enhancers HUVEC blood vessel
37 chr9:675800-677400 Enhancers HUES6 Cell Line embryonic stem cell
38 chr9:676000-677200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr9:676200-677200 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr9:676200-677200 Weak transcription Brain Angular Gyrus brain
41 chr9:676200-677600 Enhancers H1 Cell Line embryonic stem cell
42 chr9:676200-678000 Flanking Active TSS NHEK skin
43 chr9:676400-677200 Enhancers Brain Inferior Temporal Lobe brain
44 chr9:676400-677400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
45 chr9:676400-677400 Flanking Active TSS A549 lung
46 chr9:676400-683000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr9:676600-677200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr9:676600-677200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr9:676600-677400 Enhancers Fetal Intestine Small intestine
50 chr9:676600-677600 Enhancers Stomach Mucosa stomach

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