Variant report

Variant	rs2296489
Chromosome Location	chr14:55624977-55624978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55593801..55596205-chr14:55623625..55625506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1009977	0.82[CHB][hapmap]
rs10129505	0.88[CEU][hapmap]
rs10134317	0.87[CEU][hapmap]
rs10137409	0.96[ASN][1000 genomes]
rs10140857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10141396	0.87[CEU][hapmap]
rs10146637	0.87[CEU][hapmap]
rs10149435	0.98[ASN][1000 genomes]
rs10438127	0.92[ASN][1000 genomes]
rs1047556	0.92[ASN][1000 genomes]
rs11158034	0.88[CEU][hapmap]
rs11621351	0.96[ASN][1000 genomes]
rs11622636	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11622740	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11851870	0.81[JPT][hapmap]
rs15870	0.96[ASN][1000 genomes]
rs17253695	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17253702	0.90[JPT][hapmap]
rs17672058	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17672364	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17832359	0.96[ASN][1000 genomes]
rs1815316	0.96[ASN][1000 genomes]
rs1972221	0.88[CEU][hapmap]
rs2026633	0.87[CEU][hapmap]
rs2075603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2094436	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147970	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147972	0.92[ASN][1000 genomes]
rs2182207	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274273	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2340936	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2880103	0.84[CEU][hapmap]
rs3742566	0.93[ASN][1000 genomes]
rs3759667	0.88[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3825614	0.92[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4040064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4525413	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4580079	0.88[CEU][hapmap]
rs4644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55710823	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57033289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57970196	0.92[ASN][1000 genomes]
rs58269011	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58553156	0.94[EUR][1000 genomes]
rs66476033	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66531545	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66782529	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66842809	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66871576	0.95[ASN][1000 genomes]
rs67008693	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67092614	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67098772	0.92[ASN][1000 genomes]
rs67215571	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67395212	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67416413	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67588230	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67756714	0.93[ASN][1000 genomes]
rs67805055	0.92[ASN][1000 genomes]
rs67958555	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68083077	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7140872	0.96[ASN][1000 genomes]
rs7147247	0.87[CEU][hapmap]
rs7151581	0.87[CEU][hapmap]
rs7152390	0.88[CEU][hapmap]
rs7159824	0.87[CEU][hapmap]
rs7160110	0.82[CHB][hapmap]
rs72718804	0.94[ASN][1000 genomes]
rs7493394	0.98[ASN][1000 genomes]
rs8005117	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8005450	0.84[CEU][hapmap]
rs9919932	0.84[CEU][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
7	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:55610600-55655600	Strong transcription	Dnd41	blood
16	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
18	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:55611600-55628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:55613400-55626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
26	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:55614200-55633600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:55614800-55630400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr14:55615000-55625800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr14:55615200-55627600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:55617000-55625200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:55617000-55630200	Weak transcription	Osteobl	bone
33	chr14:55617400-55625200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:55617800-55625400	Strong transcription	HepG2	liver
35	chr14:55617800-55626800	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr14:55619200-55631200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:55619200-55646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:55619400-55634000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr14:55619600-55630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:55619600-55643800	Weak transcription	NHDF-Ad	bronchial
41	chr14:55619800-55647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:55620400-55625000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:55621000-55633200	Weak transcription	Fetal Stomach	stomach
44	chr14:55621400-55643800	Weak transcription	NH-A	brain
45	chr14:55621600-55627400	Weak transcription	A549	lung
46	chr14:55621600-55630200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:55621600-55630200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:55621600-55634400	Weak transcription	K562	blood
49	chr14:55621600-55634600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:55621800-55630200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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