Variant report

Variant	rs2296723
Chromosome Location	chr14:69890906-69890907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69877890..69879779-chr14:69890188..69892294,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1275672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17836204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2232057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2232058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2296721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7140358	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7152886	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8007612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8013221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8016546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8016589	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69891000	Weak transcription	Brain Anterior Caudate	brain
2	chr14:69868000-69892200	Weak transcription	Lung	lung
3	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
4	chr14:69868200-69891400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:69869000-69891000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:69869600-69891800	Weak transcription	Hela-S3	cervix
7	chr14:69871000-69892800	Weak transcription	Left Ventricle	heart
8	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
9	chr14:69873200-69892600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:69876200-69892800	Weak transcription	Gastric	stomach
11	chr14:69883800-69891800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:69885600-69899400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:69886400-69891400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:69886400-69908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:69886800-69892800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:69886800-69893000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:69887600-69891000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:69888400-69892600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:69888400-69895800	Weak transcription	Fetal Kidney	kidney
21	chr14:69888600-69891400	Weak transcription	Aorta	Aorta
22	chr14:69888600-69892200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr14:69888800-69891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:69888800-69891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:69888800-69891400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:69888800-69892200	Weak transcription	Fetal Brain Female	brain
27	chr14:69888800-69892600	Weak transcription	Fetal Stomach	stomach
28	chr14:69888800-69892600	Weak transcription	Spleen	Spleen
29	chr14:69889000-69892400	Weak transcription	Brain Germinal Matrix	brain
30	chr14:69889000-69892600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:69889200-69892400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:69889200-69892600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:69889200-69892800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
35	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:69889400-69892600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:69889400-69892800	Weak transcription	Right Ventricle	heart
38	chr14:69889400-69892800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
40	chr14:69889600-69891600	Enhancers	HepG2	liver
41	chr14:69889600-69891800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:69889600-69906400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:69889800-69895600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:69890000-69891600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:69890000-69895600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
47	chr14:69890200-69891000	Strong transcription	Fetal Intestine Small	intestine
48	chr14:69890200-69894400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr14:69890200-69894600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:69890200-69894800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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