Variant report

Variant	rs2297962
Chromosome Location	chr14:65844724-65844725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65825848..65828815-chr14:65843230..65844945,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130526	0.86[CHB][hapmap]
rs10143920	0.86[CHB][hapmap]
rs10483777	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12431562	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12432032	0.86[CHB][hapmap]
rs12432426	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12433051	1.00[EUR][1000 genomes]
rs12433273	0.86[CHB][hapmap]
rs12433688	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12436349	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12436482	1.00[CHB][hapmap]
rs12436871	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12437088	0.86[CHB][hapmap]
rs12437132	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs12437394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17102688	0.86[CHB][hapmap]
rs17102708	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs56921348	0.85[ASN][1000 genomes]
rs57309452	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57571874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58794139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59170311	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60824754	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7141590	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7157053	0.83[AFR][1000 genomes]
rs73282204	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73282206	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73282208	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65840400-65850800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65841400-65848600	Weak transcription	Brain Substantia Nigra	brain
3	chr14:65843800-65845200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:65843800-65845200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:65844000-65844800	Enhancers	Adipose Nuclei	Adipose
6	chr14:65844000-65845000	Enhancers	Fetal Intestine Small	intestine
7	chr14:65844200-65844800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:65844200-65844800	Enhancers	Hela-S3	cervix
9	chr14:65844200-65844800	Enhancers	NHDF-Ad	bronchial
10	chr14:65844200-65845200	Enhancers	HSMMtube	muscle
11	chr14:65844400-65845000	Enhancers	Colon Smooth Muscle	Colon

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