Variant report

Variant	rs2298240
Chromosome Location	chr13:110815673-110815674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72652093	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1045170	chr13:110815422-110836716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791200-110825600	Weak transcription	Esophagus	oesophagus
2	chr13:110791400-110820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110791400-110825800	Weak transcription	A549	lung
4	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
5	chr13:110795800-110826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:110798400-110825400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:110798800-110825600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:110799000-110821200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:110800000-110824800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:110800000-110825800	Strong transcription	Ovary	ovary
13	chr13:110800200-110837800	Strong transcription	NH-A	brain
14	chr13:110800600-110834200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr13:110800800-110821800	Strong transcription	Placenta	Placenta
16	chr13:110801000-110818400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:110801000-110822600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr13:110802400-110822000	Strong transcription	Colon Smooth Muscle	Colon
19	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:110803000-110822000	Weak transcription	Small Intestine	intestine
21	chr13:110803000-110834200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110803200-110815800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:110803200-110826000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
26	chr13:110803200-110839800	Strong transcription	Osteobl	bone
27	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr13:110804000-110825800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr13:110804800-110825200	Weak transcription	Brain Anterior Caudate	brain
30	chr13:110806200-110824000	Weak transcription	Liver	Liver
31	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr13:110807800-110826200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr13:110808000-110824000	Weak transcription	Colonic Mucosa	Colon
34	chr13:110809000-110821400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr13:110809000-110822000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr13:110809200-110821200	Strong transcription	Fetal Lung	lung
37	chr13:110809200-110840000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr13:110809400-110817000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr13:110809400-110824800	Weak transcription	Fetal Brain Female	brain
40	chr13:110809600-110828000	Weak transcription	Fetal Brain Male	brain
41	chr13:110809800-110816400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr13:110809800-110819800	Strong transcription	Fetal Intestine Large	intestine
43	chr13:110809800-110820200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:110809800-110820600	Strong transcription	Fetal Stomach	stomach
45	chr13:110809800-110831200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr13:110810200-110866400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr13:110810400-110826000	Strong transcription	Aorta	Aorta
48	chr13:110810600-110825600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr13:110810800-110819600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr13:110810800-110824000	Strong transcription	Lung	lung

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