Variant report

Variant	rs2299137
Chromosome Location	chr7:39392000-39392001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10248165	0.81[ASN][1000 genomes]
rs10251013	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269183	0.82[ASN][1000 genomes]
rs11971775	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1558159	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1990243	0.86[ASN][1000 genomes]
rs2190887	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237411	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299135	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299140	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299141	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329388	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329389	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329390	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329391	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2876835	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800854	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60586729	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6962623	0.96[ASN][1000 genomes]
rs740509	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887013	0.85[ASN][1000 genomes]
rs917401	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39389600-39392400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39389600-39392600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:39389600-39392800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:39389600-39392800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:39389600-39393200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:39389600-39393600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:39389600-39395000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:39389600-39395000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:39389800-39393600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:39390200-39393400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:39390400-39395000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:39391000-39393400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:39391200-39393200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:39391200-39393400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:39391400-39393200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:39391400-39394600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:39391400-39394800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:39391800-39392400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:39391800-39392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:39391800-39393200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:39391800-39394400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:39392000-39393200	Weak transcription	Psoas Muscle	Psoas

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