Variant report

Variant	rs2299500
Chromosome Location	chr7:126372389-126372390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126371685..126373556-chr7:126380338..126382419,2	K562	blood:

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1008907	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10216158	0.80[CHB][hapmap]
rs10232001	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs10234189	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10256873	0.90[CHB][hapmap]
rs10280247	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs10487454	0.95[JPT][hapmap]
rs10487455	0.95[JPT][hapmap]
rs10487456	0.95[JPT][hapmap]
rs10487458	0.85[CHB][hapmap]
rs10808224	0.95[JPT][hapmap]
rs10808227	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap]
rs10954120	0.95[JPT][hapmap]
rs10954131	0.95[JPT][hapmap]
rs10954134	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap]
rs10954135	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs10954138	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs11486997	0.95[JPT][hapmap]
rs11971186	0.80[YRI][hapmap]
rs11971474	0.95[JPT][hapmap]
rs11978951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12154335	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs12532564	0.95[JPT][hapmap]
rs12533174	0.95[JPT][hapmap]
rs12533463	0.95[JPT][hapmap]
rs12533543	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs12534101	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12536122	0.95[JPT][hapmap]
rs12537689	0.95[JPT][hapmap]
rs12538680	0.95[JPT][hapmap]
rs12538710	0.95[JPT][hapmap]
rs12538744	0.95[JPT][hapmap]
rs12538796	0.95[JPT][hapmap]
rs12540159	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12666621	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs12674181	0.95[JPT][hapmap]
rs12706744	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1361989	0.95[JPT][hapmap]
rs1361990	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs1419476	0.95[JPT][hapmap]
rs1419479	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs1419480	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs1419481	0.95[JPT][hapmap]
rs1419484	0.91[GIH][hapmap];0.95[JPT][hapmap]
rs1419485	0.95[JPT][hapmap]
rs1419486	0.95[JPT][hapmap]
rs1419487	0.95[JPT][hapmap]
rs1419488	0.95[JPT][hapmap]
rs1419489	0.95[JPT][hapmap]
rs1419493	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1419494	0.95[JPT][hapmap]
rs1419495	0.95[JPT][hapmap]
rs1419498	0.86[JPT][hapmap]
rs1468155	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs1468156	0.95[JPT][hapmap]
rs1579215	0.95[JPT][hapmap]
rs17609121	0.91[JPT][hapmap]
rs17610345	0.95[JPT][hapmap]
rs17610889	0.95[JPT][hapmap]
rs17612358	0.95[JPT][hapmap]
rs17682376	0.91[JPT][hapmap]
rs17683130	0.95[JPT][hapmap]
rs17683331	0.95[JPT][hapmap]
rs17683777	0.95[JPT][hapmap]
rs17684332	0.95[JPT][hapmap]
rs17690706	0.95[JPT][hapmap]
rs1815971	0.95[JPT][hapmap]
rs1894733	0.95[JPT][hapmap]
rs1946112	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1946116	0.81[CHD][hapmap]
rs2027988	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2027989	0.95[JPT][hapmap]
rs2073862	0.95[JPT][hapmap]
rs2106308	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs2106309	0.95[JPT][hapmap]
rs2106310	0.95[JPT][hapmap]
rs2106311	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2106312	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2106313	0.95[JPT][hapmap]
rs2106314	0.95[JPT][hapmap]
rs2237743	1.00[JPT][hapmap]
rs2237745	0.95[JPT][hapmap]
rs2237747	0.95[JPT][hapmap]
rs2237750	0.95[JPT][hapmap]
rs2237751	0.95[JPT][hapmap]
rs2237752	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2237756	0.94[JPT][hapmap]
rs2237762	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237767	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237768	0.88[CEU][hapmap];0.91[GIH][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2283070	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2299465	0.95[JPT][hapmap]
rs2299466	0.91[JPT][hapmap]
rs2299467	0.95[JPT][hapmap]
rs2299468	0.95[JPT][hapmap]
rs2299470	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2299475	0.95[JPT][hapmap]
rs2299476	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2299477	0.95[JPT][hapmap]
rs2299478	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2299479	0.95[JPT][hapmap]
rs2299480	0.95[JPT][hapmap]
rs2299484	0.95[JPT][hapmap]
rs2299486	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs2299487	0.95[JPT][hapmap]
rs2299488	0.95[JPT][hapmap]
rs2299491	0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2402816	0.86[GIH][hapmap];0.86[JPT][hapmap]
rs2402822	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2896372	0.95[JPT][hapmap]
rs2896373	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3802001	0.95[JPT][hapmap]
rs3808150	0.92[CEU][hapmap]
rs3808156	0.95[JPT][hapmap]
rs3808157	0.95[JPT][hapmap]
rs3808161	0.95[JPT][hapmap]
rs3824018	0.95[JPT][hapmap]
rs4141361	0.95[JPT][hapmap]
rs4236623	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4236624	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4380862	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4728050	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6467092	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs6467095	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6467096	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6467097	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs6963108	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6964806	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs6969693	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6974018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6974396	0.95[JPT][hapmap]
rs6976797	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs728600	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs728601	0.95[JPT][hapmap]
rs728602	0.95[JPT][hapmap]
rs737702	0.81[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7455156	0.95[JPT][hapmap]
rs756900	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7779831	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7780253	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7784073	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7790017	0.95[JPT][hapmap]
rs7792592	0.93[GIH][hapmap];0.95[JPT][hapmap]
rs7792700	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7804379	0.81[JPT][hapmap]
rs7804521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs886176	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9641799	0.95[JPT][hapmap]
rs9641800	0.95[JPT][hapmap]
rs9649507	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap]
rs975266	0.95[JPT][hapmap]
rs9942596	0.95[JPT][hapmap]
rs9942681	0.89[GIH][hapmap];0.91[JPT][hapmap]
rs9969183	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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