Variant report
| Variant | rs2299513 |
|---|---|
| Chromosome Location | chr7:126391428-126391429 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126389019..126391850-chr7:126393483..126396184,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10216158 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10232001 | 0.85[JPT][hapmap] |
| rs10256873 | 0.84[CHB][hapmap] |
| rs10279350 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10280247 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs10487458 | 0.94[CHB][hapmap];0.90[JPT][hapmap] |
| rs10808227 | 0.81[CHB][hapmap] |
| rs10954134 | 0.81[CHB][hapmap] |
| rs10954135 | 0.81[CHB][hapmap] |
| rs10954138 | 0.81[CHB][hapmap] |
| rs11978951 | 0.80[CHB][hapmap] |
| rs12534101 | 0.81[CHB][hapmap] |
| rs1362001 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1946116 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2283070 | 0.81[CHB][hapmap] |
| rs2299514 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4728050 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs6467095 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs6467096 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs6467097 | 0.80[JPT][hapmap] |
| rs6974018 | 0.80[CHB][hapmap] |
| rs7801141 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9649507 | 0.81[CHB][hapmap] |
| rs9969183 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
