Variant report
| Variant | rs2299526 |
|---|---|
| Chromosome Location | chr7:126665324-126665325 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126085913-126088095..7:126662926-126671620 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10268335 | 0.91[EUR][1000 genomes] |
| rs10487464 | 0.91[EUR][1000 genomes] |
| rs10487465 | 0.91[EUR][1000 genomes] |
| rs10487466 | 0.91[EUR][1000 genomes] |
| rs11563750 | 0.91[EUR][1000 genomes] |
| rs11563755 | 0.91[EUR][1000 genomes] |
| rs11563756 | 0.91[EUR][1000 genomes] |
| rs11563757 | 0.91[EUR][1000 genomes] |
| rs11563758 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11563759 | 0.91[EUR][1000 genomes] |
| rs11563760 | 0.89[EUR][1000 genomes] |
| rs11563761 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11563782 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12669516 | 0.91[EUR][1000 genomes] |
| rs17644601 | 0.89[AMR][1000 genomes] |
| rs17862270 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17862277 | 0.91[EUR][1000 genomes] |
| rs17863187 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17864094 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17864106 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17874838 | 0.91[EUR][1000 genomes] |
| rs2237781 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62468871 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62468872 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6958658 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
