Variant report

Variant	rs2299538
Chromosome Location	chr7:126776959-126776960
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1006728	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs10225883	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs10954144	1.00[ASW][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11563357	0.91[YRI][hapmap]
rs11563708	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563728	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12375090	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1361954	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361963	0.93[JPT][hapmap]
rs1419424	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1419446	1.00[JPT][hapmap]
rs17864136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17867755	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1894731	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2010184	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2237780	0.84[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs2237784	1.00[ASW][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap]
rs2237786	1.00[ASW][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237789	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2237790	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs2237791	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2237792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237794	0.84[MEX][hapmap]
rs2283090	0.83[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2283091	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2283092	0.83[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2283093	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283095	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2283096	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2283097	0.84[MEX][hapmap]
rs2299525	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs2299530	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2299535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs2299537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2299539	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2299541	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3808118	0.84[MEX][hapmap]
rs3808122	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs3808127	0.87[JPT][hapmap]
rs3824009	0.90[GIH][hapmap]
rs4141410	0.93[JPT][hapmap]
rs6942923	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6949620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6964926	0.93[JPT][hapmap]
rs6975409	0.83[MEX][hapmap]
rs6975798	0.93[JPT][hapmap]
rs6977479	0.86[EUR][1000 genomes]
rs6978939	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6979287	0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6979572	0.93[JPT][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs7778276	0.93[JPT][hapmap]
rs7778308	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs7791539	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs7792406	0.93[JPT][hapmap]
rs951111	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437572	chr7:126772562-126781574	Inactive region	lncRNA	n/a	inside rSNPs	diseases
5	esv3692944	chr7:126775198-126779956	Inactive region	lncRNA	n/a	inside rSNPs	diseases
6	nsv8212	chr7:126775552-126781641	Inactive region	lncRNA	n/a	inside rSNPs	diseases
7	esv3476737	chr7:126776037-126781506	Inactive region	lncRNA	n/a	inside rSNPs	diseases
8	esv3476735	chr7:126776079-126781508	Inactive region	lncRNA	n/a	inside rSNPs	diseases
9	esv3476738	chr7:126776101-126781487	Inactive region	lncRNA	n/a	inside rSNPs	diseases
10	esv3476734	chr7:126776104-126781470	Inactive region	lncRNA	n/a	inside rSNPs	diseases
11	esv3476736	chr7:126776163-126781419	Inactive region	lncRNA	n/a	inside rSNPs	diseases
12	nsv499782	chr7:126776176-126781419	Inactive region	lncRNA	n/a	inside rSNPs	diseases
13	esv3476739	chr7:126776177-126781417	Inactive region	lncRNA	n/a	inside rSNPs	diseases
14	nsv517633	chr7:126776219-126779956	Inactive region	lncRNA	n/a	inside rSNPs	diseases
15	esv15450	chr7:126776235-126781390	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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