Variant report
| Variant | rs2299554 |
|---|---|
| Chromosome Location | chr7:126857154-126857155 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10487472 | 1.00[CEU][hapmap] |
| rs12334074 | 1.00[CEU][hapmap] |
| rs17862333 | 1.00[CEU][hapmap] |
| rs17863242 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.88[ASN][1000 genomes] |
| rs17864160 | 0.82[CEU][hapmap];0.88[ASN][1000 genomes] |
| rs17864165 | 1.00[CEU][hapmap] |
| rs17864170 | 1.00[CEU][hapmap] |
| rs17864185 | 1.00[CEU][hapmap] |
| rs17864189 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17865066 | 1.00[CEU][hapmap] |
| rs17865434 | 1.00[CEU][hapmap] |
| rs17866153 | 1.00[CEU][hapmap] |
| rs17866314 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17866414 | 1.00[CEU][hapmap] |
| rs17866742 | 1.00[CEU][hapmap] |
| rs17866749 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17867065 | 1.00[CEU][hapmap] |
| rs17867806 | 1.00[CEU][hapmap] |
| rs17867809 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17869261 | 1.00[CEU][hapmap] |
| rs17869284 | 1.00[CEU][hapmap] |
| rs6957728 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1819919 | chr7:126850298-126888714 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
