Variant report

Variant	rs2300893
Chromosome Location	chr2:37481982-37481983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37480116..37482731-chr2:37487739..37490899,3	MCF-7	breast:
2	chr2:37456368..37460309-chr2:37478130..37482518,4	K562	blood:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10176949	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10177176	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10184179	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10190959	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10209937	0.84[EUR][1000 genomes]
rs1056021	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11124569	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11124574	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1158218	0.83[EUR][1000 genomes]
rs1158219	0.83[EUR][1000 genomes]
rs11679617	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11680401	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11682607	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11683872	0.89[EUR][1000 genomes]
rs11685805	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11689794	0.82[EUR][1000 genomes]
rs11693917	0.80[EUR][1000 genomes]
rs11893943	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12616151	0.83[EUR][1000 genomes]
rs12618410	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13015451	0.82[EUR][1000 genomes]
rs13420463	0.85[ASN][1000 genomes]
rs1989172	0.80[ASN][1000 genomes]
rs2041836	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268990	0.84[EUR][1000 genomes]
rs2300884	0.81[ASN][1000 genomes]
rs2888434	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3213745	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34819784	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755195	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3770759	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4998429	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57361399	0.80[ASN][1000 genomes]
rs6743782	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72792829	0.88[ASN][1000 genomes]
rs74177070	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570547	0.82[EUR][1000 genomes]
rs7584565	0.82[EUR][1000 genomes]
rs7589296	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9309004	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2300893	CEBPZ	cis	Esophagus Mucosa	GTEx
rs2300893	CEBPZ	cis	Nerve Tibial	GTEx
rs2300893	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs2300893	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs2300893	CEBPZ	cis	Esophagus Muscularis	GTEx
rs2300893	PRKD3	cis	lung	GTEx
rs2300893	CEBPZ	cis	Thyroid	GTEx
rs2300893	CEBPZ	cis	lung	GTEx
rs2300893	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
2	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
4	chr2:37460400-37492200	Weak transcription	Fetal Heart	heart
5	chr2:37460400-37498600	Weak transcription	Gastric	stomach
6	chr2:37460600-37488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:37460600-37493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
9	chr2:37461000-37488200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:37461000-37489800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:37461800-37486800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr2:37462000-37487200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:37462000-37488000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:37463200-37487200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:37463200-37487600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:37463200-37488000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr2:37463400-37488400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:37463600-37489600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr2:37463800-37484800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr2:37463800-37488200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:37464000-37488400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:37464400-37487000	Strong transcription	HSMM	muscle
25	chr2:37464400-37489600	Strong transcription	Liver	Liver
26	chr2:37464800-37486600	Strong transcription	Fetal Intestine Large	intestine
27	chr2:37465000-37489600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr2:37466000-37487600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:37467200-37487000	Strong transcription	HepG2	liver
30	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
31	chr2:37468200-37486400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr2:37468200-37487600	Strong transcription	Adipose Nuclei	Adipose
33	chr2:37468200-37487800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr2:37468200-37488200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:37468400-37486800	Strong transcription	Primary hematopoietic stem cells	blood
36	chr2:37468400-37488400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr2:37468400-37492400	Strong transcription	NH-A	brain
38	chr2:37468600-37486200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:37468600-37486600	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr2:37470400-37487000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr2:37470400-37488000	Strong transcription	Dnd41	blood
42	chr2:37470400-37498600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:37470600-37482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:37470600-37493400	Weak transcription	Fetal Intestine Small	intestine
46	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:37471000-37490000	Strong transcription	Fetal Thymus	thymus
48	chr2:37471200-37486800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:37471400-37486600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:37471400-37487600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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