Variant report

Variant	rs2302983
Chromosome Location	chr5:98115828-98115829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11739315	0.81[CHB][hapmap]
rs12515608	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2271218	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2302981	0.93[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs72773678	0.84[ASN][1000 genomes]
rs7702352	0.81[MEX][hapmap]
rs7721369	0.85[CHB][hapmap]
rs7727348	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2302983	RGMB	cis	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98109600-98119200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:98110200-98125200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
3	chr5:98110400-98119200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:98110800-98118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:98110800-98123200	Weak transcription	Aorta	Aorta
6	chr5:98111000-98116200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:98111000-98118600	Weak transcription	Gastric	stomach
8	chr5:98111000-98128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:98111600-98116000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
12	chr5:98111800-98116200	Weak transcription	Fetal Kidney	kidney
13	chr5:98111800-98119000	Weak transcription	Spleen	Spleen
14	chr5:98111800-98120200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:98112000-98116200	Weak transcription	A549	lung
16	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:98112200-98117600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:98112200-98118800	Weak transcription	Brain Angular Gyrus	brain
19	chr5:98112400-98116000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:98112400-98116200	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:98112400-98116400	Enhancers	HepG2	liver
22	chr5:98112400-98118200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:98112400-98120400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:98112400-98121600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:98112400-98122400	Weak transcription	Fetal Heart	heart
26	chr5:98113000-98118200	Weak transcription	Brain Anterior Caudate	brain
27	chr5:98113200-98120000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:98113400-98116000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:98113400-98116200	Weak transcription	Fetal Brain Female	brain
30	chr5:98113400-98118200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:98113400-98120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:98113400-98120800	Weak transcription	Fetal Brain Male	brain
33	chr5:98114000-98120200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:98114600-98116600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:98114600-98116600	Enhancers	Stomach Mucosa	stomach
36	chr5:98114600-98117800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:98114600-98119800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:98114600-98120800	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr5:98114800-98116400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr5:98115000-98116000	Genic enhancers	HUVEC	blood vessel
42	chr5:98115000-98116400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr5:98115000-98116800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:98115000-98117200	Transcr. at gene 5' and 3'	NHLF	lung
45	chr5:98115000-98117600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr5:98115000-98118000	Strong transcription	HMEC	breast
47	chr5:98115000-98118600	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:98115000-98118800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:98115000-98122200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:98115000-98125400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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