Variant report

Variant	rs2304503
Chromosome Location	chr3:78796078-78796079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1487139	0.84[CHB][hapmap]
rs1840969	0.84[CHB][hapmap]
rs333491	0.84[CHB][hapmap]
rs333495	0.84[CHB][hapmap]
rs35812135	0.88[ASN][1000 genomes]
rs416551	0.84[CHB][hapmap]
rs444598	0.83[JPT][hapmap]
rs510006	0.81[GIH][hapmap];0.89[JPT][hapmap]
rs6762005	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9822781	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78783200-78797000	Weak transcription	Fetal Lung	lung
2	chr3:78783800-78803400	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:78787400-78802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:78787800-78800000	Weak transcription	HMEC	breast
6	chr3:78788000-78796800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:78788400-78803400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:78788800-78802600	Weak transcription	NH-A	brain
9	chr3:78792200-78796400	Strong transcription	HepG2	liver
10	chr3:78793200-78802600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:78793600-78802800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:78795200-78796400	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links