Variant report

Variant	rs2306037
Chromosome Location	chr11:46911781-46911782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr11:46910667-46911906	SK-N-SH	brain:	n/a	chr11:46911434-46911448 chr11:46911341-46911355
2	RAD21	chr11:46910410-46912540	SK-N-SH	brain:	n/a	chr11:46911340-46911359 chr11:46911436-46911449
3	CTCF	chr11:46911660-46911810	HVMF	connective:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:46910425..46912611-chr11:47175096..47177749,2	K562	blood:
2	chr11:46911530..46913407-chr11:46920458..46923271,2	K562	blood:
3	chr11:46910320..46911827-chr11:47174259..47175968,19	MCF-7	breast:
4	chr11:46892660..46895337-chr11:46911586..46914448,2	MCF-7	breast:
5	chr11:46910973..46911895-chr11:47198555..47199228,3	MCF-7	breast:

Variant related genes	Relation type
LRP4	TF binding region
ENSG00000149182	Chromatin interaction
ENSG00000149179	Chromatin interaction
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1007738	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10734548	1.00[JPT][hapmap]
rs10742784	0.83[ASN][1000 genomes]
rs10769211	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10769212	0.85[ASN][1000 genomes]
rs10838624	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10838627	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838628	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838629	0.92[ASN][1000 genomes]
rs11038977	1.00[JPT][hapmap]
rs11038994	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11038999	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039002	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039014	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11039017	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039018	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039024	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11039035	0.86[EUR][1000 genomes]
rs11606992	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12575609	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12807111	0.90[ASN][1000 genomes]
rs1551744	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs17790204	0.86[EUR][1000 genomes]
rs1809293	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2035068	0.98[ASN][1000 genomes]
rs2290883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2290884	0.85[ASN][1000 genomes]
rs2306026	0.85[ASN][1000 genomes]
rs2306027	0.96[ASN][1000 genomes]
rs2306028	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306033	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306035	0.99[ASN][1000 genomes]
rs2306036	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867219	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2903522	0.92[ASN][1000 genomes]
rs3136431	0.92[YRI][hapmap]
rs3136441	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3136447	1.00[JPT][hapmap]
rs3136457	1.00[JPT][hapmap]
rs3136460	1.00[JPT][hapmap]
rs3136497	0.91[YRI][hapmap]
rs3136519	0.91[YRI][hapmap]
rs3816614	0.85[ASN][1000 genomes]
rs3829940	0.83[ASN][1000 genomes]
rs4076557	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4294527	1.00[JPT][hapmap]
rs4394802	0.81[JPT][hapmap]
rs4469848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4494268	0.82[EUR][1000 genomes]
rs4603264	0.91[YRI][hapmap]
rs4752932	1.00[JPT][hapmap]
rs4752933	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4752936	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4752940	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4752941	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4752946	1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752947	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58389391	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5896	1.00[JPT][hapmap]
rs60258676	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485694	0.89[YRI][hapmap]
rs6485716	0.88[EUR][1000 genomes]
rs7101374	1.00[JPT][hapmap]
rs7107778	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7118170	0.96[ASN][1000 genomes]
rs7119247	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7480140	0.81[ASN][1000 genomes]
rs7480260	0.80[ASN][1000 genomes]
rs7929294	0.91[JPT][hapmap]
rs7934421	0.81[ASN][1000 genomes]
rs7940441	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7941252	0.85[ASN][1000 genomes]
rs7943866	0.85[ASN][1000 genomes]
rs898604	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964551	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2306037	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
2	chr11:46868800-46913000	Weak transcription	A549	lung
3	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
9	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
13	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
14	chr11:46895400-46917400	Weak transcription	NHLF	lung
15	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
16	chr11:46897400-46921800	Weak transcription	HMEC	breast
17	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
18	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:46898600-46916600	Weak transcription	Liver	Liver
21	chr11:46898800-46916600	Weak transcription	Gastric	stomach
22	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
23	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
25	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
27	chr11:46901000-46913400	Weak transcription	Right Ventricle	heart
28	chr11:46901400-46917400	Weak transcription	NH-A	brain
29	chr11:46903000-46912000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:46905000-46912000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr11:46905000-46917800	Weak transcription	Right Atrium	heart
32	chr11:46905200-46912000	Strong transcription	Brain Substantia Nigra	brain
33	chr11:46905200-46912200	Strong transcription	Fetal Intestine Small	intestine
34	chr11:46905600-46917400	Weak transcription	Esophagus	oesophagus
35	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:46908000-46915200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:46908000-46916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:46908000-46916800	Weak transcription	Lung	lung
40	chr11:46908000-46917400	Weak transcription	Colonic Mucosa	Colon
41	chr11:46908200-46916600	Weak transcription	Fetal Brain Female	brain
42	chr11:46908400-46916000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:46908600-46914400	Weak transcription	Ovary	ovary
44	chr11:46908600-46916000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:46908600-46916000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:46908600-46916800	Weak transcription	Brain Angular Gyrus	brain
47	chr11:46908800-46918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:46909000-46914200	Weak transcription	Spleen	Spleen
49	chr11:46909000-46914400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:46910000-46911800	Strong transcription	Fetal Intestine Large	intestine

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