Variant report

Variant	rs2307483
Chromosome Location	chr2:37365798-37365799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37364963..37367318-chr2:37382727..37385453,2	MCF-7	breast:
2	chr2:37357539..37359526-chr2:37365167..37367263,2	MCF-7	breast:
3	chr2:37362229..37364115-chr2:37364384..37367049,2	K562	blood:

Variant related genes	Relation type
ENSG00000055332	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10176303	0.87[CEU][hapmap]
rs10188586	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs10191403	0.87[CEU][hapmap]
rs10194972	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs11892108	1.00[CHB][hapmap]
rs11896614	1.00[CHB][hapmap]
rs13398187	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs13414561	1.00[CHB][hapmap]
rs13429945	1.00[CHB][hapmap]
rs17410072	1.00[CHB][hapmap]
rs2307472	1.00[CHB][hapmap]
rs2373113	1.00[EUR][1000 genomes]
rs2373114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845782	0.87[CEU][hapmap]
rs4233920	1.00[CHB][hapmap]
rs4648150	1.00[CHB][hapmap]
rs4648153	1.00[CHB][hapmap]
rs4648156	1.00[CHB][hapmap]
rs4648166	1.00[CHB][hapmap]
rs4648169	1.00[CHB][hapmap]
rs4648170	1.00[CHB][hapmap]
rs4648171	1.00[CHB][hapmap]
rs4648175	1.00[CHB][hapmap]
rs4648182	1.00[MEX][hapmap]
rs4648191	1.00[CHB][hapmap]
rs4648196	1.00[CHB][hapmap]
rs4648197	1.00[MEX][hapmap]
rs4648199	1.00[CHB][hapmap]
rs4648202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648205	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648212	1.00[CHB][hapmap]
rs4648234	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs4648237	1.00[CHB][hapmap]
rs6544054	1.00[CHB][hapmap]
rs6544055	1.00[CHB][hapmap]
rs6718534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718647	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs6726403	1.00[CHB][hapmap]
rs6726768	1.00[CHB][hapmap]
rs6726921	1.00[CHB][hapmap]
rs6732075	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs6733861	1.00[CHB][hapmap]
rs6734153	1.00[CHB][hapmap]
rs6749793	1.00[CHB][hapmap]
rs6754376	1.00[CHB][hapmap]
rs72860786	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556959	1.00[CHB][hapmap]
rs7559558	1.00[CHB][hapmap]
rs759460	1.00[CHB][hapmap]
rs7596489	0.87[CEU][hapmap]
rs759668	1.00[CHB][hapmap]
rs9309005	1.00[CHB][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37315600-37367000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37319200-37377200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr2:37320600-37368000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:37332600-37375200	Strong transcription	Liver	Liver
6	chr2:37333200-37379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:37333400-37366400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:37335600-37370400	Weak transcription	Fetal Heart	heart
9	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
10	chr2:37339800-37376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:37341600-37369000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:37342200-37367800	Strong transcription	Fetal Stomach	stomach
13	chr2:37342400-37376400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:37342400-37376400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:37342400-37376600	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:37346400-37376200	Strong transcription	Fetal Intestine Large	intestine
17	chr2:37346600-37373200	Weak transcription	Stomach Mucosa	stomach
18	chr2:37347600-37376400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:37347800-37376400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:37347800-37376400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:37348400-37376000	Strong transcription	Adipose Nuclei	Adipose
22	chr2:37348400-37377000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:37348600-37371000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:37348600-37376200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:37348600-37376600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:37348600-37377200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:37348600-37377400	Strong transcription	Dnd41	blood
28	chr2:37348800-37369600	Strong transcription	Primary T cells from cord blood	blood
29	chr2:37348800-37376200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr2:37348800-37376400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr2:37348800-37376600	Strong transcription	Fetal Thymus	thymus
32	chr2:37348800-37376800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:37349000-37368600	Strong transcription	Primary hematopoietic stem cells	blood
34	chr2:37349000-37375400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:37349000-37376200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr2:37349000-37376200	Strong transcription	Fetal Brain Female	brain
37	chr2:37349200-37368600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:37349200-37369400	Strong transcription	A549	lung
39	chr2:37351800-37376000	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr2:37352200-37368800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr2:37352200-37372200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:37352600-37368800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr2:37352600-37369000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:37353000-37377200	Strong transcription	Fetal Muscle Leg	muscle
45	chr2:37354800-37371400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:37355000-37383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr2:37355200-37374800	Strong transcription	GM12878-XiMat	blood
48	chr2:37355200-37376000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:37355200-37376800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:37355600-37371000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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