Variant report

Variant	rs2309515
Chromosome Location	chr9:72224927-72224928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10123008	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10746682	0.95[CEU][hapmap];0.92[CHB][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10780527	0.81[ASW][hapmap];0.91[CEU][hapmap];0.85[JPT][hapmap]
rs10780528	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs10780539	0.87[ASW][hapmap];0.95[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867825	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10867828	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10867830	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139338	0.85[JPT][hapmap]
rs11139361	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11139511	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330334	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs1330336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411440	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1556211	0.87[CEU][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap]
rs1854702	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs1854703	0.87[CEU][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs1967880	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs1970017	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs2026150	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2161056	0.82[CEU][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744913	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs4744917	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs4744918	0.82[AFR][1000 genomes]
rs4744919	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs6559643	0.85[JPT][hapmap]
rs7030393	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs7031694	0.87[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7853783	0.85[JPT][hapmap]
rs7871895	0.85[JPT][hapmap]
rs986352	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs987653	0.95[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2309515	ZFAND5	cis	parietal	SCAN
rs2309515	GDA	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219600-72226000	Weak transcription	Liver	Liver
3	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
4	chr9:72221200-72237200	Weak transcription	Ovary	ovary
5	chr9:72224000-72226200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:72224600-72225000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:72224600-72225000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:72224600-72225800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:72224600-72225800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:72224600-72226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:72224800-72226000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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