Variant report

Variant	rs2316043
Chromosome Location	chr3:81940492-81940493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13314900	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs17019364	0.82[ASN][1000 genomes]
rs17019369	0.82[ASN][1000 genomes]
rs1851922	0.86[EUR][1000 genomes]
rs1851924	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1973802	0.83[EUR][1000 genomes]
rs2680275	0.84[EUR][1000 genomes]
rs2680276	0.84[CEU][hapmap]
rs3772886	0.84[CEU][hapmap]
rs3772896	0.80[CHB][hapmap]
rs61540531	0.82[ASN][1000 genomes]
rs62267150	0.82[EUR][1000 genomes]
rs6768673	0.86[EUR][1000 genomes]
rs6776410	0.85[CEU][hapmap]
rs6778413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785740	0.81[EUR][1000 genomes]
rs6791629	0.83[EUR][1000 genomes]
rs6791857	0.82[ASN][1000 genomes]
rs6798822	0.84[EUR][1000 genomes]
rs6804613	0.83[EUR][1000 genomes]
rs7611917	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623056	0.84[CEU][hapmap]
rs7635332	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644425	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9812141	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9812505	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9813371	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9825400	0.82[EUR][1000 genomes]
rs9827558	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9831301	0.82[EUR][1000 genomes]
rs9835279	0.86[EUR][1000 genomes]
rs9838598	0.83[EUR][1000 genomes]
rs9851559	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9870979	0.83[EUR][1000 genomes]
rs9871474	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81938800-81940600	Weak transcription	Fetal Brain Male	brain
2	chr3:81939000-81940600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:81939600-81940800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:81939600-81941200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:81939600-81941200	Enhancers	Dnd41	blood
6	chr3:81939600-81942000	Enhancers	Fetal Thymus	thymus
7	chr3:81940000-81941200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:81940000-81941400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:81940000-81941400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:81940200-81941000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:81940200-81941000	Enhancers	Thymus	Thymus
12	chr3:81940200-81941200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:81940200-81941200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:81940200-81941200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:81940200-81941400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:81940200-81941400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:81940200-81941400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:81940400-81940600	Enhancers	Psoas Muscle	Psoas
19	chr3:81940400-81940600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr3:81940400-81941200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:81940400-81941200	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links