Variant report

Variant	rs2316156
Chromosome Location	chr16:80625423-80625424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80617779..80619968-chr16:80623504..80625457,2	MCF-7	breast:
2	chr16:80620426..80622988-chr16:80624627..80626821,2	MCF-7	breast:
3	chr16:80623692..80626755-chr16:80631234..80633032,3	MCF-7	breast:
4	chr16:80625101..80626775-chr16:80839502..80841949,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10395	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1562989	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1985288	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2316157	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4281727	0.80[EUR][1000 genomes]
rs4516240	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547350	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4622522	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7202869	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7405439	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8053414	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9923760	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9927579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9932574	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9936948	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80619200-80632600	Weak transcription	Hela-S3	cervix
2	chr16:80621200-80628200	Weak transcription	Placenta	Placenta
3	chr16:80624400-80626600	Enhancers	Primary hematopoietic stem cells	blood
4	chr16:80624800-80625800	Enhancers	Fetal Muscle Leg	muscle
5	chr16:80624800-80626000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:80624800-80626000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:80624800-80626200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr16:80624800-80626400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr16:80624800-80626400	Enhancers	Fetal Thymus	thymus
10	chr16:80624800-80626400	Enhancers	Dnd41	blood
11	chr16:80624800-80626600	Weak transcription	Right Ventricle	heart
12	chr16:80624800-80626600	Enhancers	Thymus	Thymus
13	chr16:80625000-80625600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr16:80625000-80625600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:80625000-80625600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr16:80625000-80625600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr16:80625000-80625600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr16:80625000-80625600	Enhancers	GM12878-XiMat	blood
19	chr16:80625000-80626000	Enhancers	Primary B cells from peripheral blood	blood
20	chr16:80625200-80625600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr16:80625200-80625600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr16:80625200-80625600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr16:80625200-80625600	Enhancers	Duodenum Mucosa	Duodenum
24	chr16:80625200-80625800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr16:80625200-80625800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr16:80625200-80625800	Enhancers	HSMMtube	muscle
27	chr16:80625400-80625600	Enhancers	Primary T cells fromperipheralblood	blood
28	chr16:80625400-80625600	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr16:80625400-80626000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr16:80625400-80626000	Enhancers	Spleen	Spleen
31	chr16:80625400-80626400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr16:80625400-80626600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr16:80625400-80645600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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