Variant report

Variant	rs2322795
Chromosome Location	chr4:143427874-143427875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:143391887..143396825-chr4:143425228..143429441,6	MCF-7	breast:
2	chr4:143427176..143429713-chr4:143432403..143434347,2	K562	blood:
3	chr4:143427468..143430250-chr4:143437553..143439341,2	MCF-7	breast:
4	chr4:143427848..143430198-chr4:143433217..143434733,2	MCF-7	breast:
5	chr4:143427118..143429201-chr4:143430844..143432946,2	MCF-7	breast:
6	chr4:143388381..143398737-chr4:143415738..143428678,26	MCF-7	breast:
7	chr4:143426831..143429713-chr4:143432293..143434347,2	K562	blood:
8	chr4:143420911..143422875-chr4:143427108..143429305,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10008498	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10011782	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12108640	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1391099	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs1425531	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1425533	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1425536	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1425537	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1489581	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes]
rs17016163	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17016175	0.92[CEU][hapmap];0.92[AMR][1000 genomes]
rs17016195	0.83[ASN][1000 genomes]
rs17016306	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1817970	0.84[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs1834391	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2113996	0.93[EUR][1000 genomes]
rs2113997	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2874841	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2874865	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28822497	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3844178	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3863128	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3913163	0.92[CEU][hapmap];0.92[AMR][1000 genomes]
rs3913164	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4956444	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4975308	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60924405	0.93[EUR][1000 genomes]
rs713071	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7662794	0.90[JPT][hapmap]
rs7672965	0.92[CEU][hapmap]
rs7695918	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9308151	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs976564	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143425600-143429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:143427400-143428400	Enhancers	Fetal Heart	heart

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